Roseobacter denitrificans: RD1_B0020
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Entry
RD1_B0020 CDS
T00376
Symbol
rfbC
Name
(GenBank) dTDP-4-dehydrorhamnose 3,5-epimerase
KO
K01790
dTDP-4-dehydrorhamnose 3,5-epimerase [EC:
5.1.3.13
]
Organism
rde
Roseobacter denitrificans
Pathway
rde00521
Streptomycin biosynthesis
rde00523
Polyketide sugar unit biosynthesis
rde00541
O-Antigen nucleotide sugar biosynthesis
rde01100
Metabolic pathways
rde01110
Biosynthesis of secondary metabolites
rde01250
Biosynthesis of nucleotide sugars
Module
rde_M00793
dTDP-L-rhamnose biosynthesis
Brite
KEGG Orthology (KO) [BR:
rde00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00541 O-Antigen nucleotide sugar biosynthesis
RD1_B0020 (rfbC)
09109 Metabolism of terpenoids and polyketides
00523 Polyketide sugar unit biosynthesis
RD1_B0020 (rfbC)
09110 Biosynthesis of other secondary metabolites
00521 Streptomycin biosynthesis
RD1_B0020 (rfbC)
Enzymes [BR:
rde01000
]
5. Isomerases
5.1 Racemases and epimerases
5.1.3 Acting on carbohydrates and derivatives
5.1.3.13 dTDP-4-dehydrorhamnose 3,5-epimerase
RD1_B0020 (rfbC)
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Motif
Pfam:
dTDP_sugar_isom
PH_20
FLYWCH
Motif
Other DBs
NCBI-ProteinID:
ABI93429
RoseoBase_p2:
RD1_B0020
UniProt:
Q07GH0
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All DBs
Position
pTB2:complement(22359..22955)
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AA seq
198 aa
AA seq
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MPDQGEDKELQIEQTKLAGVFVLTPKRFGDARGFFSESWSAREMAAQGLDFTWVQDNHSL
SMQTGTVRGLHFQSPPHAQAKLVRCGRGAFFDVAVDIRRGSPTYGQWVGAELSYENGKQM
LVPTGFLHGFATRQPETEIIYKCSDYYAPECDGAVRFDCPTIGIDWGLGDLEPVLSDKDA
AAQGLADFDSPFVWEGVQ
NT seq
597 nt
NT seq
+upstream
nt +downstream
nt
atgcccgatcagggcgaggataaagagttgcagattgaacagacgaaattggcgggtgtt
tttgttctgacacccaaacggttcggggatgcgcgcggatttttcagtgaaagctggagc
gcgcgggagatggccgcgcaggggcttgatttcacctgggtgcaggacaatcattcgctg
tcgatgcagacaggcacggtgcggggcctgcattttcaatctcccccccatgcgcaggcc
aaactcgtgcgctgcgggcgtggggcgtttttcgatgtggccgtcgacatccggcgcggc
tcacccacctatggccagtgggttggcgcggaactgagctatgagaatggcaagcagatg
ctggtgcccaccggtttcctgcatgggttcgccacccgccagcccgagacggaaatcatc
tacaaatgctctgattattatgcgcccgaatgcgacggggcggtccgctttgactgcccg
accatcgggatcgactggggtttgggcgatttagagcctgttttgtcagacaaagacgcc
gcagcccaagggcttgcggatttcgacagcccgttcgtctgggagggggtgcaatga
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