Rothia dentocariosa: HMPREF0733_11480
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Entry
HMPREF0733_11480 CDS
T01343
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
rdn
Rothia dentocariosa
Pathway
rdn03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rdn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HMPREF0733_11480 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rdn03400
]
HMPREF0733_11480 (mfd)
Enzymes [BR:
rdn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HMPREF0733_11480 (mfd)
DNA repair and recombination proteins [BR:
rdn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
HMPREF0733_11480 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
DUF1474
RecG_dom3_C
DUF3638
Motif
Other DBs
NCBI-ProteinID:
ADP40937
UniProt:
E3GZW7
LinkDB
All DBs
Position
1619058..1622747
Genome browser
AA seq
1229 aa
AA seq
DB search
MKLTGLSRLLAEQPSYRHILEACDVPAAERPVQTLIGAVAGVQAPLIADLAVAVRRQSRT
GKTPLTLIITPTERQAEDTAHALHSYLPDHHIESFPAWETLPHERLSPRSDTVGKRLNVL
RSITHLETPTPQVVIAPVRAVIQPLVAGIENLEPVSLARGEEYSFKDVIKGLTDAAYSRV
DLVAKRGEYAVRGGIIDVFAPTAQHPVRLEFFGDELDEIRYFSTADQRTLGQEADHPTHV
TLLPCRELLITPEVMGRAARLKTDYPAASSMLEKIAGGIYVEGMESLTPLLVDKMQTLVS
LLPEESLIISLEPERVRARAEDLVATNEEFLAAAWDASADAGSRAPIDLGQLRVSDSGFH
TIAATQQESLDRNLSWWEITELVDSVDLLNNALDDDIPTMTVAAQAPASFTGSVEQMLHE
VGSLVRDGWTVLALTNGRGSTDRLIELFRESISGEDPIPAIRRETLDGGTEGALQPGVVE
VCETPASAGFLIPEARLAVLTEGEILGRRGTYAPRGASGKKLKPRKRRNAVDPLALTPGD
YVVHERHGIGKFIEMASRPVAGVSSKHGETPLKEYLVIEYAPSKRGGAPDRLFVPSDQLD
LISHYVGSETPTLSKMGGSDWAKTKSRARKAVKEIAADLVKLYSARQASRGHAFSEDTPW
QRELEESFPYNETPDQLTAIHEVKADMEKEIPMDRLISGDVGFGKTEVAIRAAFKAVQDG
KQVAVLVPTTLLAQQHFETFTERFSGFPIKIKVLSRFQKAKETRAIVEDIASGSIDVVIG
THRILSENVKFKDLGLVVIDEEQRFGVEHKEKLKQMRTNVDVLAMSATPIPRTLEMSLTG
IRETSTLATAPEERHPVLTFVGPRTDAQITAAIRRELMREGQVFFVHNRVANIDTVAAEI
GKLVPEARIATAHGRMSESRLEQIIVDFWERRFDVLVCTTIVETGLDISNANTLIVDNAQ
NYGLSQLHQLRGRVGRGRERAYAYFLYPTDKSLGEVAHKRLKAVATHNELGAGLQLAMKD
LEIRGAGNLLGGEQSGHIAGVGFDLYLRLVGEAVANFRGEQENTEAEVKVDLPVNAHIPH
DYIDAERLRLQAYRQIASADTEQKIAEAREELHDRYGALPEPVENLLQVAVLRREAREAG
IHEITAPGPKLRVVSGEPLPESRQMRLKRVYPGSTHTQPKGLSTWLTLVPRPKTLPVGGV
DLIDGPMLEWCSKFINSIYSADPKALEES
NT seq
3690 nt
NT seq
+upstream
nt +downstream
nt
gtgaaactaactggactgagccgtcttctggcagaacagccctcctaccgtcatattctt
gaagcctgcgatgttcccgctgcggaacgtcctgtccaaaccctgattggcgccgttgcc
ggtgtacaggcaccccttatagctgatcttgccgttgcagtacggcgccagtccagaacc
ggaaaaactccgctgacgctcattattacaccaacagagcgacaggctgaggatacagcg
catgccctgcactcatatttgcccgatcaccatatcgagagctttcccgcgtgggaaact
ctgccgcatgaacggctttcgccacgcagcgataccgtgggaaaacgtctgaatgttctg
cgctctataactcatcttgaaacgccgactccacaggttgttatagccccggtgcgcgcg
gtcattcagcccctcgtggctggtattgagaacctggaaccggtaagcctggcacgcggt
gaagaatactctttcaaagacgttattaaaggtctaacagatgccgcatactcgcgtgta
gatctcgtagcaaagcgtggtgaatatgcggttcgaggcggtattatcgacgtctttgca
cctaccgcacagcatccggttcgcttggaattcttcggtgacgaacttgacgaaatacgt
tacttctcaacggcagaccagcgcactctagggcaagaagcagaccacccaacgcacgtt
actttactcccatgccgtgagcttctcattaccccggaagttatgggacgtgctgcccga
ctcaaaacggactatccggcggcatcaagcatgcttgagaaaatcgcgggaggtatctat
gtcgaaggcatggaatctctaaccccgcttcttgtcgataaaatgcagactcttgtgtct
ctgctccccgaagaatcactcattatttctctggaacctgagcgggtgcgtgcccgtgcc
gaagaccttgtggcaaccaacgaggagtttttagcggccgcttgggatgcttccgctgat
gcgggctcgcgtgcgcctatagacttgggacagcttcgggtcagcgacagcgggttccac
acgattgccgcgacccagcaggaatctttggaccgtaacctatcctggtgggaaatcacc
gagcttgtcgatagtgtagatcttctcaacaatgctctcgatgacgacatcccaactatg
acggtcgcggcacaggctccagcatccttcaccggttcggtagaacaaatgcttcacgag
gttggttcgctggttcgtgacggctggacggtactggcgcttaccaatgggcgaggatcc
accgaccgcctcatcgaacttttccgcgagagtatctcaggagaagacccaattccggcc
atacgccgggaaaccctcgacgggggaacggaaggcgctctacagcccggagtcgtcgaa
gtttgtgagaccccagcctctgccggatttttaattcctgaggcgcgccttgctgtcttg
actgaaggtgaaattttgggcaggcgcggcacctacgcgccacgtggcgcgagcggtaaa
aaactcaaaccccgtaaacgacgcaacgccgtcgatcctctggcgttaacccctggcgat
tatgtggttcacgaacgccacggtatcggtaaattcattgaaatggcctcgcgcccagtc
gctggagtgtcctcaaaacatggggaaacccctttgaaagaatacctggtgatcgagtat
gcgccttccaaacgcgggggagcccctgaccgcctctttgtgccctccgatcagctggat
ctcatttcgcactatgtgggaagcgaaaccccgaccctctctaaaatgggcgggagcgac
tgggctaagacaaagagtcgcgcacgtaaagcggttaaagaaatcgccgctgacttggtt
aaactctactcggcgcggcaagcttcgcgcggtcatgcattctcagaagatactccctgg
caacgggaacttgaggaatcttttccttataatgagactcccgaccagctcaccgctatt
cacgaggttaaggcggatatggagaaggaaatccccatggatcgcctgatctccggggac
gtcggctttggcaaaacggaggtcgctattcgggcggccttcaaagccgtgcaggatggt
aaacaggttgccgtactcgtacccacaaccctgctggcgcagcagcattttgagactttt
accgagcgtttctcgggattccccatcaaaattaaggtgctatcgcgcttccaaaaagct
aaagaaacccgcgctatcgtggaggatattgcctccgggagtatagatgtggtgattggt
acccaccgcatcctctcggaaaacgtgaagttcaaggatcttggactcgtcgttattgat
gaggaacagcgctttggtgtggagcataaggaaaagctcaagcagatgcgcactaatgtg
gatgtgcttgccatgagcgccaccccaattccgcgcacgcttgaaatgtcgcttaccggt
attcgggagacctcaacattggcgactgcgccggaagagaggcatcccgtgctgaccttt
gtggggccgcgtaccgatgcccagattactgccgctattcgacgcgaacttatgcgggaa
gggcaggtattcttcgtccataacagggtggcgaatattgatactgtcgccgccgaaatc
ggtaagctcgtgccggaggcgcgcatcgccacggcgcacgggcgcatgagcgaatctcgg
cttgagcagattatcgtggacttctgggagcgacgcttcgatgttctggtgtgtacaacc
atcgtggaaaccgggttggatatttcaaacgccaataccctgattgtcgataacgcccag
aattatggtctgagtcagctgcaccagctgcgcgggcgtgtgggccgcgggcgtgaacgg
gcttatgcctacttcctgtacccgacggataagagcctgggtgaggtcgcgcataaacgc
ctcaaagctgtagctacccataacgagctgggtgccggtctgcagctggcgatgaaagac
cttgaaattcgtggcgccggaaacctgctcggcggcgaacagtccgggcatatcgcgggt
gtcggctttgatctgtatctgcgtctcgtgggagaagctgtagccaacttccgcggcgaa
caggagaacaccgaggccgaggttaaggttgatcttcctgtcaacgcccatattccgcat
gattatattgatgcggaacgtctacgcctgcaggcataccgccagatagcctccgcagac
accgaacagaaaatcgcggaggcacgcgaagagcttcatgaccgttacggtgccttaccc
gagcccgtggagaatctgcttcaggtggcggtgctgcgccgcgaagcacgggaagcaggc
atccacgagattactgcgccgggaccgaaactgcgcgtggtcagcggtgaaccgctgccg
gaatcacggcagatgcgcctcaaacgtgtgtatcccggctcaactcacacccaaccgaag
ggtctgagcacgtggctgactctggttccgcgtcctaagactctgccggtcggtggcgtg
gaccttattgacggtcctatgttggaatggtgctcgaagttcattaactctatctactcg
gcagacccgaaagcattggaggagtcatga
DBGET
integrated database retrieval system
