Roseateles depolymerans: RD2015_2330 Help Entry RD2015_2330       CDS       T04166                                  Name (GenBank) ATP-dependent DNA ligase   KO K01971   bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] Organism rdp  Roseateles depolymerans Pathway rdp03450   Non-homologous end-joining Brite KEGG Orthology (KO) [BR:rdp00001]  09120 Genetic Information Processing   09124 Replication and repair    03450 Non-homologous end-joining     RD2015_2330  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03400 DNA repair and recombination proteins [BR:rdp03400]     RD2015_2330 Enzymes [BR:rdp01000]  6. Ligases   6.5  Forming phosphoric-ester bonds    6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)     6.5.1.1  DNA ligase (ATP)      RD2015_2330 DNA repair and recombination proteins [BR:rdp03400]  Prokaryotic type   DSBR (double strand breaks repair)    NHEJ (non-homologous end-joining)     Two-component NHEJ DNA repair complex      RD2015_2330 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  LigD_Prim-Pol LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S RNA_ligase Motif Other DBs NCBI-ProteinID:  ALV06801 UniProt:  A0A0U2U3K0 LinkDB All DBs Position 2725631..2728522 Genome browser AA seq 963 aa AA seqDB search MPSRAQTGAEAPLSRYIAKRNFAGGTSEPKGRVVRRRAKEALSFVIQKHWASHLHYDFRL ELDGVLLSWAVPKGPSLDPRQRRMAVQVEDHPVDYGSFEGTIPPKQYGAGEVIIWDNGTW EPVGDPKAGLRDGKFVFRLHGQKLAGLWQLVRTSKGDAKREQWLLIKKHDAWERPHDDYD VTMELPDSVVAKPLGRVEDRESAAGSAQASSSDEASVPSADAAAADTSEPDLSRARKARQ PAEMSPQLATLVSSTPPGEWISEAKLDGYRLMTRITKGRVQLITRGGHDWTDRMPTLAKA LADLNLDSAWLDGEVVVLGPEGAPVFNLLQNAIGRSGRPARGGSARSGASSGAKRTNAAH GTKAANAANGTNGSSGVAAPGEADIVYFLFDVPYLQGHDLREVPLRERRRVLQTLLADQP DDHLRFSEALEAPPNEMLAAACQMRLEGLILKRPDAPYVSTRSDTWVKLKCQLRQEFVVV GFTPRSDAPKGLGSLLLAVRDDQASGRASKGASGWRYAGRVGTGWSLAQGAALRAQLETL AIDKPLFTAEDIQRSHWARRPGGDEHWVRPDMVVEVAFAEWTPDGHIRHAAFQGVREDKP AEEIGMEAAKSPEDVGSGGRRAGSKTSAKSSKTSAQPASKTASQSPAKRSGKVSTQTAAS AAGESRSSARASKTAGTSSRTSSSPANSQLRITHPDRVIDEASGATKIQLVRYYESVSEW LLPHLDQRPLALVRAPDGVGGQLFFQKHVEGDDLIVVRNMAQVLEFTQLNTVEFHTWNSR ADKLDKPDRIVFDLDPGEGVSFAQVREGAQLVRALLEELQLKAWLKTSGGKGLHVVVPLT RRADHDACKAFSHAVVDHLAATLPKRFSAKSGPRNRVGKIFVDYLRNGEGQTTAAAFSVR ARPGMGVSMPVDWDQLPDLKGGDHWTLRDARDHLSFVKRDPWADYWTCRQTLTAGLRMLQ AED NT seq 2892 nt NT seq  +upstreamnt  +downstreamnt atgccttcccgcgcccagaccggggccgaagcgcccctgagccgctacatcgccaaacgc aacttcgcgggcggcacgtccgagcccaaaggccgtgtggtccgtcgtcgcgctaaggag gcgctgagtttcgtcatccagaagcactgggccagccatctgcattacgacttccggctg gagctggacggggtgctgctgagttgggcggtccccaaggggccgtcgctggacccccgc cagcggcgcatggccgtgcaggtggaagaccacccggtggactacggcagcttcgagggc accatcccgcccaagcagtacggcgccggcgaggtgatcatctgggacaacggcacctgg gagccggtcggcgaccccaaggcggggctgcgcgacgggaagttcgttttccggctgcat ggccagaagctggcggggctctggcaactggtgcgcacctccaagggggacgccaagcgg gagcaatggctgctcatcaagaagcacgacgcctgggagcgcccgcacgacgactacgac gtgacgatggaactgccggacagcgtggtggccaagccgctggggcgggtggaggatcgg gagtcggcggcgggcagcgcccaggcttcgtcatccgatgaagcctccgtcccaagcgct gatgcagcggctgcggacacttccgaaccggacctctcccgcgctcgcaaggcccggcaa cccgccgagatgtcgccccaactggccacgctggtgtccagcacgccgcccggcgaatgg atcagcgaggcgaagctcgacggctaccgcctgatgacccgcattaccaagggccgggtc caactgatcacccggggcggccacgactggaccgaccgcatgccaaccctggcgaaggcg ctggccgacctgaacctggactccgcctggctggacggcgaggtggtggtgctggggccg gaaggggctccggtattcaatctgctgcaaaacgccatcggccgatcgggccggccggcc agaggcggatccgccagatccggtgcatccagcggtgccaagcgtaccaacgctgcccac ggtaccaaggctgccaacgccgctaacggtaccaacggttccagcggagtcgctgcgccg ggcgaggcggacatcgtgtatttcctgttcgacgtgccctacctccagggtcatgacctg cgtgaggtgccactgcgcgagcgccgccgcgtgctgcagaccctgctggccgaccagccg gacgatcacctgcgtttcagcgaagcgctggaagcgccgcccaacgagatgctggccgcc gcgtgccagatgcggctggaagggctgatcctgaagcggccggacgcaccgtacgtcagc acccgaagcgacacctgggtgaagctcaagtgccagctccggcaggagttcgtggtggtc ggcttcacgccgcgaagcgacgcccccaaggggctgggcagcctgctgctggccgtgcgg gacgaccaggcttccgggcgtgcgtccaaaggcgcctctggctggcgttacgccggtcgg gtggggacgggatggtcgctggcgcagggcgcggccttgcgggcacagctagagactctt gccatcgacaagcccctgtttaccgccgaagacatccagcgcagccattgggcccgccga ccgggtggggacgagcactgggtgcgtccggacatggtggtggaggtggcgtttgccgaa tggaccccggacggccacatccggcatgcagcgtttcaaggggtgcgggaggacaaaccc gccgaggagattggaatggaagcagcgaaaagcccggaggatgttggaagcgggggccga cgcgccggctcgaaaacttcggccaagagctccaaaacctcagctcaacctgcctccaag actgcgtcccagtcaccagccaagcgctcaggcaaggtgtccacccagaccgcagccagt gccgcgggcgagtcccgatccagcgcacgcgccagcaagaccgcaggcacatcgagccgc acatcctcatcccccgccaacagccaactgcgcatcacccacccggaccgcgtgatcgac gaagcctccggcgccaccaagatccagctggtgcgctattacgaaagcgtgtccgaatgg ctgctgccccacctggaccagcgtccgctggcgctggtccgtgcgcccgacggcgtgggc ggacagctgttcttccagaagcatgtggaaggcgacgacctgatcgtggtgcgcaacatg gcgcaggtgctcgagttcacgcagctcaacaccgtggagttccacacctggaacagccgc gccgacaagctcgacaaacccgaccgcatcgtctttgacctggaccccggcgaaggcgtc agctttgcgcaggtgcgcgaaggcgcccagttggtccgcgcactgctggaggagctgcag ctcaaggcctggctcaagaccagtggcggcaagggcctgcatgtggtggtgccgctgacc cgccgggccgatcacgacgcctgcaaggccttcagtcacgcggtggtggaccacctggcg gccacgctgcccaagcgcttctcggccaagagcggtccgcgcaaccgggtgggcaagatc ttcgtggactacctgcgcaatggggaagggcagaccacggcggcggcattctcggtgcgg gcgcgtccgggcatgggcgtgtcgatgccggtggattgggaccagttgcccgacctcaag gggggcgaccactggacgctgcgggacgcccgggaccacctgagtttcgtcaagcgcgac ccctgggccgactactggacctgccggcagaccctcacagcgggtctgcgaatgctgcaa gcagaggactga

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