Roseateles depolymerans: RD2015_3400
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Entry
RD2015_3400 CDS
T04166
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
rdp
Roseateles depolymerans
Pathway
rdp03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rdp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
RD2015_3400
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rdp03400
]
RD2015_3400
Enzymes [BR:
rdp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RD2015_3400
DNA repair and recombination proteins [BR:
rdp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
RD2015_3400
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
DUF4217
ERCC3_RAD25_C
SNF2-rel_dom
Motif
Other DBs
NCBI-ProteinID:
ALV07857
UniProt:
A0A0U2U764
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All DBs
Position
3979012..3982527
Genome browser
AA seq
1171 aa
AA seq
DB search
MQLSSIAPGKRFTQPRPIGSADALLLATFAQQQMAAGRLTVVVTAEPGDTQRLEDELKFF
APGLRVAVFPDWETLPYDSFSPHQDLISERLATLWRLLQANGKGVAERDLDVVLLPATTA
LTRLAPPSFLAATTFNFKQKQRLDESALKQQLTLGGYQHVSQVVSPGEYAVRGGLIDLFP
MGSTVPYRVDLFGDEVDSIRVFDPDSQRSLYPVPDVRLLPGREFPMDEASRKAFRARWRE
KMDGDPTRSRIYKDIDTGLATAGIEYYLPLFFDQVASLFDYLPSEAGLVLHGEVDEALQR
FWTDTRERHRFLQHDPERPILPPEEIYLRPEDFYAATHRHAVLSVRGREPVDYARPLPDV
SVERGAQEPLARLAGHLKSTSHRVLLLAESEGRRESLLELLRDNKIDPPSVKDLAEFLAG
DERFAITAAPLAAGFSWVNPAVAGTAPAPAAGDAGDAGDAPILQLFTETELFATTPTTRR
RRKQEQISDVNALIKDLSELKVGDPVVHTNHGIGRYLGLINIDLGEGPSEFLHLEYADKA
TLYVPVAQLHLISRYTGVSPEEAPLHKLGSGQWDKARRKAAEQVRDTAAELLNLYARRAA
REGHAFRYSPHDYEAFAASFGFEETPDQRAAIHAVIQDMISPRPMDRLVCGDVGFGKTEV
ALRAAFVAVMGGKQVAVLAPTTLLAEQHFQNIADRFGKWPVKVAEMSRFRSAKEIKAAME
GLADGSIDIVIGTHKLLSADVKFKRLGLLVIDEEHRFGVRHKEAMKAMRAEVDVLTLTAT
PIPRTLGMALEGLRDLSVIATAPQRRLAIKTFVRSENSGTIREAVLRELKRGGQVYFLHN
EVDTIENRRMKLQELLPEARIVVAHGQMPERELERVMREFVGGKHNLLLCSTIIETGIDV
PSANTIVISRADKFGLAQLHQLRGRVGRSHHQAYAYLMVPDIEGLTKQAAQRLEAIQNME
ELGSGFYLAMHDLEIRGAGEVLGENQSGNMMEVGFQLYNDMLSEAVRSLKAGREPDLLSP
LSATTEINLHAPALLPDAYCGDVHQRLSLYKRLATADKADQIDAMLEEITDRFGKLPPQG
QTLFDTHRLRVLAKPYGVQKIDAAPTVININFRPNPPIDALRVIELVQKNRNIKLVGNEK
LRIDKALSDPKDRAQAVREVLRLLGAPTTTA
NT seq
3516 nt
NT seq
+upstream
nt +downstream
nt
atgcagctgtcttccatcgctcccggtaaacgcttcacccaaccccgccccatcggttcc
gccgacgcgctgttgctggccacctttgcccagcagcagatggccgccggtcgcctgacc
gtggtggtgaccgccgagccgggagacacccagcggctggaagatgaactcaagttcttt
gcgccagggctgcgcgtggccgtgttccccgactgggaaaccctgccctacgacagtttc
agtccgcaccaggacctgatctcggagcgtctggccacgctgtggcgcctgctgcaggcc
aacggcaaaggcgtggccgagcgcgacctggatgtggtgctgctcccggccaccaccgcc
ctgacccgcctggcgccgccgtccttcctggcggccaccaccttcaacttcaagcagaag
cagcggctggacgaatccgccttaaagcagcagctcacgctgggcggctaccagcatgtg
agccaggtcgtctcgcccggcgaatatgcggtgcgcggtggcctgatcgacctgttcccg
atgggctcgaccgtgccctaccgcgtcgacctgttcggcgacgaggtggactccatccgc
gtcttcgatccggacagccagcgcagcctgtacccggtgccggacgtgcggctgctgccc
ggccgcgagttcccgatggacgaggcctcgcgcaaggccttccgcgcccgctggcgcgag
aagatggacggggacccgacccggtcgcgcatctacaaggacatcgacacgggcctggcc
accgccggcatcgagtactacttgccgctgttcttcgaccaggtcgccagcctgttcgac
tatctgccgtccgaggcgggcctggtgctgcatggcgaggtggacgaagcgctgcaacgc
ttctggaccgacacccgcgagcgccaccgcttcctgcagcatgatcccgagcggcccatc
ctgccgccggaagagatctacctgcggcccgaagatttctacgccgccacccaccgccac
gccgtgctgtcggtgcgaggccgcgagccggtggactatgcgcggccgctgcccgacgtg
agcgtggagcgtggtgcgcaggaaccgctggcgcgcctggccggccatctgaagagcacc
tcccaccgcgtgctgctgctggccgagagcgaaggccgccgcgaaagcctgctggagctg
ctgcgcgacaacaagatcgatccgccctcggtcaaggacctggccgaattcctggcgggc
gacgagcgttttgccatcaccgcggcgccgctggcggcgggtttcagctgggtgaatccg
gcggtggcagggaccgcaccggcgcctgccgcgggggacgcgggtgacgcaggtgacgcc
cccatcctgcagctcttcaccgagaccgagctctttgccaccacccccaccacccgtcgg
cggcgcaagcaggagcagatcagtgacgtcaatgcgctaatcaaggacctctccgaactc
aaggtcggggatccggtggtgcacaccaaccacggtatcggccgatacctggggctgatc
aacatcgacctgggggaaggccccagcgagttcctgcatctggaatatgcggacaaggcc
acgctgtatgtgccggtcgcgcagctgcacctgatcagccgctacaccggcgtcagcccg
gaagaggcgccactgcacaagctcgggtcgggccagtgggacaaggcccgtcgcaaggcc
gccgagcaggtgcgagacaccgcggccgagctgctgaacctctacgcccggcgtgccgcc
cgcgaaggccacgccttccgctactccccgcacgactacgaggcctttgccgcgagcttc
ggcttcgaggagaccccggaccagcgcgccgccatccatgcggtcatccaggacatgatc
agcccgcgtccgatggaccggctggtctgcggcgacgtgggcttcggcaagaccgaggtg
gcgctgcgcgccgctttcgtggcggtgatgggcggcaagcaggtggcggtgctggcgccc
accaccctgctcgccgagcagcacttccagaacatcgccgaccgtttcggcaagtggccg
gtcaaggtggcggaaatgagccgcttccgctccgccaaggagatcaaggccgcgatggaa
ggcctggcggacggctccatcgacatcgtcatcggcacccacaagctgctgtccgccgat
gtgaagttcaagcggctgggcctgctggtgatcgacgaggaacaccgctttggcgtgcgg
cacaaggaagccatgaaggccatgcgggccgaggtcgatgtgctgacgctcaccgccacc
ccgattccgcgcacactgggcatggcgctggagggtctgcgtgacctgagcgtgattgcc
accgccccgcagcgccgcctggccatcaagaccttcgtgcgcagcgaaaacagcggcacc
atccgcgaagcagtgctgcgcgaactcaagcgtgggggccaggtctacttcctgcacaac
gaggtggataccatcgagaaccgccgcatgaagctgcaggagctgctgccggaggcgcgc
atcgtcgtggcccacggccagatgccggagcgggagctggaacgggtgatgcgcgagttc
gtgggcggcaagcacaacctgctgctgtgctccaccatcatcgaaaccggcatcgacgtg
cccagcgccaacaccatcgtgatcagccgcgccgacaagttcggcctggcccagctgcat
cagctgcgcggccgggtgggacgatcccaccaccaggcctatgcctacctgatggtgccg
gacatcgaaggactgaccaagcaggcggcccagcggctggaagccatccagaacatggaa
gagctgggctcgggcttctacttggcgatgcacgacctggaaatccgcggcgccggcgag
gtgctgggcgagaaccagagcggcaacatgatggaagtgggcttccagctctacaacgac
atgctgtccgaggcggtgcgctcgctcaaggccggtcgtgagcccgatctgctcagcccg
ctgtccgccaccaccgaaatcaacctgcatgcccccgccctgctgccggacgcgtattgc
ggcgacgtgcatcagcgtctgtcgctctacaagcggctggccacggcggacaaggccgac
cagatcgatgcgatgctggaagaaatcaccgaccgctttggcaagctgccgccgcagggc
cagaccctgttcgacacccaccggctgcgggtgctggccaaaccgtatggcgtgcagaag
attgatgcggcccccaccgtcatcaacatcaacttccgtccaaacccgccgattgatgcg
ctgcgggtgattgagctggtgcagaagaaccgcaacatcaagctggtgggcaatgagaag
ctgcgcatcgacaaggccctgagtgatccgaaggaccgggcgcaggcggtgcgcgaggtg
ctgcggttgctgggtgcacccacgacgacggcatga
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