Rhodococcus erythropolis BG43: XU06_20305
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Entry
XU06_20305 CDS
T03842
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
reb
Rhodococcus erythropolis BG43
Pathway
reb03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
reb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
XU06_20305
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
reb03400
]
XU06_20305
Enzymes [BR:
reb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
XU06_20305
DNA repair and recombination proteins [BR:
reb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
XU06_20305
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
IstB_IS21
DUF3638
AAA_22
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AKE00852
LinkDB
All DBs
Position
complement(4479852..4483478)
Genome browser
AA seq
1208 aa
AA seq
DB search
MTSLSSAQTALAGLAEVALADAAFTPVIDSIGAPALDIVAPKPARPFIAAALAARTPVLL
VTATGREADDLTSELTEMLGGGVAQFPSWETLPHERLSPSADTVGRRVEVLRRLARPDDA
SYGSPLRVIVTTVRSLVQPMAPGLGEIEPITLRVGTEIDFDSVLVRLVEMAYSRVDMVGK
RGEFAVRGGILDLFSPTADHPVRIEFWGDEVSELRYFSVADQRSLPDVDVDSVIAPPCRE
LILTADVRDRAAALAAENQADASLVEMLDKISAGIPVEGMEALLPVLKPGELQLLSDVLP
VGAHILLCDPEKVRTRATDLVRTGQEFLEASWTAASIGGAAPLDTSILNGGGVDLGASAY
RSLRHVRESAEAAGRPWWTVSPLASGNGEELEIPVQAAPQVRGSDDLLAELFVSLRAHVS
TGGRAAIVVAGAGTASRVVERLGEAEVPAKMLEGGATPARGQVAVLRGSLHDGLVLAGDD
STPGMVIVTESDLTGNRVAAVGDGKRLPAKRRNQVDPLALSAGDMVVHDQHGIGRFVEMV
ERTIGGARREYLVIEYAPSKRGHPGDRLFVPMESLDQLSRYVGGELPALSKLGGSDWANT
KRKARKAVREIAGELVQLYAARQAAPGHAFGPDTPWQKELEDAFAFTETIDQLTVISEVK
ADMEKPVPMDRVVIGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLAQQHLQTFTERM
ASFPVKVRGLSRFTDAKDSKEIIAGMAEGEIDIVVGTHRLLQTGIRWKDLGLVIVDEEQR
FGVEHKEHIKALRTHVDVLTMSATPIPRTLEMSMAGIREMSTILTPPEERHPILTYVGAY
ADKQVAAAIRRELLRDGQVFYVHNRVSSIDKAAKKIRELVPEARVVVAHGQMNEDTLEKT
VQGFWERDFDVLVCTTIIETGLDISNANTLIVERADSLGLSQLHQLRGRVGRSRERGYAY
FLYPAEKPLTETAYDRLATISQNSDLGAGMAVAMKDLEIRGAGNVLGAEQSGHVAGVGFD
LYVRLVGEAVEAFRAAADGKPITMDEGTKEVRIDLPVDAHIPPDYVTSDRLRLEGYRKLA
AATDSDGIAAVVEELVDRYGPLPEEVRRLISVAKLRLLCREYQLEEVAVTGTQLKISPMS
LPDSKQIRLKRIYPSAQYRATTGLVQLPLPRTGGVGSDRLRDVELLQYIADFILAIDGRA
AGAVLVEA
NT seq
3627 nt
NT seq
+upstream
nt +downstream
nt
ttgacttccttgtcctctgcccagactgcgctcgctggactcgccgaggtcgccctcgca
gacgccgcgttcactccagtgatcgactcaatcggtgcgcctgccctggacatcgtggcg
ccgaagccggctcgaccattcatcgccgctgcacttgccgcgcgcactccggtgctgctg
gtgacggccaccggtcgcgaagccgacgatctgacatcagaactcaccgagatgctcggt
ggaggcgtcgcgcagttcccgtcgtgggaaacattgccgcacgagcgactgtcgccgagc
gcggacaccgttgggcgacgggtggaggtactgcgccgactcgccagaccagacgacgcc
tcgtacggctcgcctcttcgggtgatcgtgaccacggtgcgctctctcgttcagccgatg
gcgccgggtcttggcgagatcgagccgatcacgttgcgcgtcggcaccgagatcgatttc
gattctgttctggttcgtctggtggagatggcgtacagccgtgtcgacatggtgggaaag
cgtggtgagttcgcggtccgcggcggcattctcgacctgttctcgccgacggcggatcat
ccggtacgtatcgaattctggggtgacgaggtatcggagcttcggtacttctctgtcgcc
gatcagcgttcgctaccggacgtcgacgtcgattccgtgatcgcgccgccgtgtcgtgag
ctgattctgacagctgatgttcgcgatcgagctgcggcactcgctgctgagaatcaggct
gacgcttcgttggtcgagatgctggacaagatctcggcaggcatccccgtcgaggggatg
gaagctctgctcccggttctcaaacccggtgaactgcaactactttccgatgtccttccg
gtaggggcgcacatccttctgtgcgatccggagaaggtgcgcacccgcgccaccgatctg
gtgcgcaccggccaggaattcttggaagcgtcgtggacggcggcgtcgatcggcggcgct
gcaccgctcgacacgtcgatcctcaacggcgggggagtcgatctcggtgcctccgcatac
cggtcgcttcgtcatgttcgcgaatctgccgaagctgccggccgtccgtggtggacggtc
agcccgctggcgtcgggaaatggtgaagaacttgaaatcccggttcaggcggcaccgcag
gtacgtggttccgacgacctgttggccgagctgttcgtcagcctccgggcacacgtgagc
acgggcggtcgcgcggcgatcgtggtggcaggcgccggcacagcaagccgagtcgtcgag
cgactcggtgaagccgaagtgcccgcaaagatgctcgaaggcggagcgacccctgcccgc
ggacaggtcgcggtgctccgcgggtctctgcacgacggactggtactcgccggggacgac
tcgacgccggggatggtgatcgtcaccgagtccgatctgacgggcaaccgcgttgcagcg
gtcggcgacggaaagcgcttgccggccaagcgccgcaatcaggtcgatccgctcgcgctg
tctgccggggacatggtcgtgcacgatcagcacggtatcggccggttcgtcgagatggtc
gaacgcaccatcggcggggcgcgtcgtgaatacttggtcatcgagtatgcgccgagcaag
cgtggtcacccgggtgatcgtctgttcgtcccgatggaatcgctcgatcaactctcccgg
tacgtcggtggagagttgcctgcgctgagcaagctcggtggatccgactgggcgaacacc
aagcgtaaggcccgcaaggcggttcgtgagatcgcgggtgagttggttcagctctacgct
gcgcgtcaggcggccccggggcatgcgttcggcccggacacgccgtggcagaaggaactc
gaagacgcgttcgccttcaccgagaccatcgaccagttgaccgtcatcagtgaggtcaag
gccgacatggagaagccggttccgatggaccgggtggtgatcggtgacgtcgggtacggc
aagacggagatcgccgttcgtgccgcgttcaaggcagtccaggacggcaagcaggtggcg
gtactggtcccgacgactctgcttgcacagcaacatcttcagacattcaccgaacgaatg
gcgtcgttcccggtgaaggtgcgagggctgtcccgtttcaccgacgccaaagactcgaag
gaaatcatcgccggcatggccgaaggcgagatcgacatcgtcgtcggtactcaccggttg
ctgcagaccggtattcgctggaaagacctcgggcttgtgatcgtcgacgaggaacagcga
ttcggagtcgagcacaaggaacatatcaaggcactacgcacccacgtcgacgtcctgacg
atgtcggctaccccgattcctcgtactctcgagatgagcatggccgggatccgtgagatg
tccacgatcctcacaccgccggaagaacgtcatccgatcctcacttacgtcggcgcgtat
gcggacaagcaggttgccgcggccatccggcgtgaacttctgcgcgacggtcaggtcttc
tacgtacacaaccgtgtcagctcgatcgacaaggcagccaagaagatccgtgaactcgtc
ccggaggctcgcgtcgtcgtcgcgcacggtcagatgaacgaggacactctcgaaaagacc
gtgcagggcttctgggaacgcgacttcgacgtgttggtctgtaccacgatcatcgaaacc
ggtctggacatctcgaacgcgaacacactgatcgtcgaacgtgcggactcgcttggcctc
tcgcagttgcatcagctccgcggacgcgtcgggcgtagtcgtgaacgtggatacgcatac
ttcctgtacccggccgaaaagccgttgacggaaacggcatacgaccgactggcaacgatt
tcgcagaattcggacctcggcgccggtatggcagtcgcgatgaaggacctcgaaatccgt
ggagccggaaacgttctgggcgcagagcagtccggccacgtcgcgggcgtcgggttcgat
ctgtatgtcaggctggtcggtgaggcggtcgaagccttccgggctgcagccgacggcaaa
ccgatcaccatggacgagggcacgaaggaagtccggatcgacctaccggtggacgcgcac
atcccgcccgactatgtcaccagtgacaggctcaggttggaggggtaccgcaagctcgct
gcggcaactgattccgacggcatcgctgccgtagtcgaagaactggtcgatcgctacggc
ccactgcccgaagaggttcgacggctgatctcggtggccaagcttcgactgctctgccgc
gagtaccaactggaggaagtcgccgtcaccggaactcagctcaagatctcgccgatgtca
ctgcccgattccaaacagatcaggctcaagaggatctatccgagcgcgcagtaccgggca
acgaccgggctcgtgcaactcccgctgcctcgcaccggcggagtcggctcggatcgcctg
cgggacgtcgaactacttcaatacatcgcggacttcatcttggcgatagacgggcgcgcc
gccggtgccgtcctggtcgaggcgtga
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