Roseibacterium elongatum: roselon_02953
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Entry
roselon_02953 CDS
T03060
Name
(GenBank) Transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
red
Roseibacterium elongatum
Pathway
red03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
red00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
roselon_02953
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
red03400
]
roselon_02953
Enzymes [BR:
red01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
roselon_02953
DNA repair and recombination proteins [BR:
red03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
roselon_02953
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
CarD_TRCF_RID
UvrB_inter
ResIII
AAA_30
AAA_16
RecG_dom3_C
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
AHM05238
UniProt:
W8RVC7
LinkDB
All DBs
Position
complement(2818078..2821581)
Genome browser
AA seq
1167 aa
AA seq
DB search
MSQPDHIFAGGAPEGFDATLLLRELGRRDGPVLHIARDDKRAEAMATALAFFDPTVPVLR
FPGWDCLPYDRVSPNPDISAQRMATLAGLASGAITGDVIVLTTLNAAMQYIPPRALLQSS
AFVATVGGRIDEGALKGFLVRMGFVQAPTVTEPGDYAVRGGIIDVWPPGEPAPVRLDLFG
DVLDGARRFDPVSQRTTEKLDRIELAPVSEVILDEAAITRFRQNYRIEFGAAGSDDPLYE
AVSAGRKHQGVEHWLPFFHERLETLFDYLPDAAVTLDDQSTPQRLSRWESIADQYDTRKT
ALTQKGRLDTVYKPVPPEQLYLSDAAWQDAIAGHRVVQLSPLPQAPGPGVIDAGGRAGRD
FAPERQNENISLFGALADHIRAKREDGAVVVASWSEGARERLKGLLEDQDIIDTVEIADA
RDLAGGKLEFSGQKNPGFSGPGTGPVHLAIWPLEQGFTGAGLTVISEQDVLGDRLIRPRR
KTRKAENYLTEAQTLSPGDLVVHVDHGVGRYNGLETITAMGAPHECLALEYAGGDRLFLP
VENIELLSRYGHEEGLLDKLGGGAWQAKKAKLKERIRQIADKLIRIAAERELRSAPVLAA
PGDMWEAFCARFPYEETDDQLSAIADVIEDLERGRPMDRLVVGDVGFGKTEVAMRAAFLA
AAQGLQVAVIAPTTLLARQHAKTFRDRFRGFPINVRQLSRFVSQKEASETKKGMADGSVD
IVIGTHALLAKNVRFKNLGLLVIDEEQRFGVTHKERLKEMRSDVHVLTLSATPIPRTLQM
SLSGVRDLSLIGTPPVDRLAIRTYVSEFDAVTIREALLREHYRGGQSFYVVPRIEDLREI
EAFLRDQVPEVSFVTAHGQMAAGELDDRMNAFYDGKYDVLLATTIVESGIDIPTANTMVI
HRADMFGLAQLYQIRGRVGRAKTRAYAYLTTKPRAKLTQSAEKRLRVLGSLDSLGAGFTI
ASQDLDIRGAGNIVGEEQSGHVREVGFELYQSMLEEAISKIRAGEAEGLPGDDGQWSPQI
NLGVPVLIPEDYVPDLDVRLGLYRRLSQLETKVDLEGFAAELIDRFGKLPREVNTLLLVV
RIKAMCKRAHIARLDAGPKGATIQFHENRFPNPQGLVEFIQAQQGLAKVKDNKIIVRRDW
KKEAEKIKGAFAIARDLAQYATTPRKS
NT seq
3504 nt
NT seq
+upstream
nt +downstream
nt
atgagccagccagatcacatcttcgccggtggcgcgcccgaagggttcgacgccacgctt
ctgctccgcgaactgggccgccgcgatggcccggtcctgcatatcgcgcgcgacgacaag
cgggccgaggcgatggcgaccgcgctggcgttcttcgatccgaccgtgccggtgctgcgc
tttcccggttgggattgcctgccctacgatcgcgtctcgcccaatcccgacatttcggcg
cagcgcatggcgacgcttgcggggctggcctcgggcgcgatcacgggcgatgtcatcgtt
ctgacgaccttgaacgcggcgatgcaatacattcccccgcgcgcgcttttgcaaagctcg
gcctttgtcgcgacggtgggcgggcgcatcgacgagggtgcgctcaaggggtttctggtg
cgcatggggttcgtacaggccccgacggtcacggaaccgggcgactatgccgtgcgcggc
ggcatcatcgacgtctggccccccggagagcccgcgccggtgcgcctggatctgttcggc
gacgtgctggatggggcgcgccgctttgatccggtcagccagcgcacgactgaaaaactc
gaccggatcgagttggcccccgtctcggaggtgatcctcgacgaggccgcgatcacgcgg
tttcgacagaattaccggatcgagttcggcgcggcgggcagtgacgatccgctctatgag
gcggtcagcgcgggccgcaagcatcagggcgtcgagcattggctgcccttttttcacgag
cggctggaaaccctgttcgactacctgcccgacgccgccgtcacgctggacgatcaatcc
acgccacaacgtctgtcccggtgggagtcgatcgccgatcaatacgacacgcgcaagacc
gcgctgacgcagaaggggcggctcgataccgtctacaaacccgtgccgcccgaacagctc
tatctgtccgacgcagcctggcaagatgcgattgccggccaccgcgtcgtgcagctttcg
cccctgccgcaagcgccggggccgggtgtgattgacgccggcggacgcgcggggcgtgat
ttcgcgcccgaacgacagaatgaaaacatcagtcttttcggcgccttggccgaccatatt
cgcgccaaacgtgaagatggcgccgtcgtggtggccagctggtccgagggcgcgcgcgag
cgtctcaagggcctgctggaagaccaggacatcatcgacaccgtcgagatcgcggacgcg
cgcgatctcgcgggcggaaaactcgagttttccggccagaaaaacccgggtttttccggc
cccggcaccggccccgtgcacctggcgatctggccgctggaacaggggttcaccggcgcg
ggcctgaccgtcatctcggagcaggacgttctgggcgatcgcctgatccgtccgcgccgc
aagacgcgcaaggccgagaactacctgaccgaggcgcagacgctgtcgcccggtgatctg
gtcgtgcatgtcgatcacggggtggggcgctacaacgggctggaaaccatcaccgcgatg
ggcgcgcctcatgaatgcctcgcgctggaatatgccggcggcgaccgcctgttcctgccg
gtcgagaatatcgagttgctgtcgcgctacggccatgaagaggggctgctggacaagctg
ggcggcggggcgtggcaggcgaagaaagccaagctcaaagaacgcatccgccagatcgcg
gacaagctgatccgcatcgccgccgaacgcgagttgcgcagcgcccccgtgctcgccgcc
cccggcgacatgtgggaggcgttctgcgcccgtttcccctacgaggaaaccgacgaccag
ctcagcgccatcgccgacgtcatcgaggatctcgaacgtggccgcccgatggaccggctg
gtggtgggcgatgtggggttcggcaagaccgaggtggcgatgcgcgcggcgtttctggcc
gcggcgcaggggttgcaggtggcggtgatcgcgcccaccacgctgttggcgcggcaacat
gccaagacctttcgcgaccggttccgcggttttccgatcaatgtgcggcagctgtcgcgg
ttcgtcagccagaaagaggcgagcgagacgaaaaagggaatggccgacggctcggtcgat
attgtcatcggcacccatgcgctgctggccaagaacgtgcgattcaagaaccttggcctg
ctggtgatcgacgaggaacagcgctttggcgtgacccacaaggaacgcctcaaggagatg
cgctcggacgtgcatgtcctgacgctctcggccacgccgatcccgcggacgctgcaaatg
tcgctgtcgggcgtgcgtgacctcagcctcatcggcacaccgccggtcgaccgtctggcc
atccgcacctatgtcagcgagttcgacgcggtgaccatccgcgaggcattgctgcgggaa
cattatcgtggcgggcaatccttttacgtggtgccgcgcatcgaggatctgcgcgagatc
gaggcgttcctgcgcgaccaggtgcccgaagtcagcttcgtcaccgcccatggtcagatg
gcggcgggcgagctggatgatcgcatgaacgcgttctatgacggcaagtatgacgtgctc
ttggccacgacgatcgtcgaatcgggcatcgacattccgacggcgaacaccatggtcatt
caccgcgccgacatgttcgggctggcgcagctgtaccagattcggggccgcgtgggccgg
gccaagacccgcgcctatgcctacctgacgaccaagccgcgcgcgaagctgacccaatcg
gccgagaaacgcctgcgcgtgctgggcagcctcgacagcctgggcgcggggttcaccatc
gccagccaggatctcgatatccgcggtgcgggcaatatcgtgggcgaggaacaatccggc
catgtccgcgaggtcgggttcgagctgtatcaatccatgctggaagaggcgatttccaag
atccgcgcgggcgaggccgaggggctgccgggcgacgatggccagtggtcgccgcagatc
aaccttggtgtgccggtcctgatccccgaggattacgtgccggatctcgacgtgcgcctt
ggcctttatcgccggctcagccagttggaaaccaaggtcgatctcgaaggctttgccgcc
gagttgatcgaccgcttcggcaagctcccgcgcgaggtcaacacgctgcttctggtggtg
cggatcaaggccatgtgcaagcgcgcccatatcgcccggctcgatgccggccccaagggc
gcgacgatccagttccacgaaaaccgctttccgaatccgcaggggctggtggagttcatc
caggcccagcagggcctggccaaggtcaaggacaacaagatcatcgtgcgccgcgactgg
aaaaaggaggccgagaagatcaagggcgccttcgccatcgcgcgtgatcttgcccaatat
gcaacgacgcccaggaaaagctga
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