Cupriavidus necator H16: H16_B2352
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Entry
H16_B2352 CDS
T00416
Symbol
h16_B2352
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
reh
Cupriavidus necator H16
Pathway
reh03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
reh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
H16_B2352 (h16_B2352)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
reh03400
]
H16_B2352 (h16_B2352)
Enzymes [BR:
reh01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
H16_B2352 (h16_B2352)
DNA repair and recombination proteins [BR:
reh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
H16_B2352 (h16_B2352)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
CAJ97134
UniProt:
Q0JYP0
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All DBs
Position
2:2662859..2665591
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AA seq
910 aa
AA seq
DB search
MAKTTRPTAPKDPGKRRAAAKGAGKPTGKRASTARPAARGAPAAKAAPAALDKYRRMRDF
GATPEPSGAARTRGKVHKRAGELSFVIQKHAARRLHYDFRLELGGALKSWAVPKGPSLDP
ADKRMAIHVEDHPLDYAGFEGVIPAGHYGAGTVIVWDRGTWLPVGDAEAGYRAGKLKFEL
RGEKLHGHWTLVRMHGSRQKEQDAWLLIKERDETAVPASEFDVVEALPDSVLGGTQRKPA
AKRAKSAQPPDEAAPDAHGTAKSLKPPRGAPRAALPLALAPQLATLVEQPPSDAQAWRYE
IKFDGYRLLARIDGKDVRLFTRQGNDWTSKLRALARDVGTLGLPDGWLDGEIVVLGKHGA
TDFQALQNAFDTARVEGIQYFVFDLPYFAGHDLRKVPLVERRALLRRIFAHNTSPRLQFS
EDFEAGPADMLEAACRMKLEGVIGKRADAAYVSARTSTWIKLKCTLRQEFVVAGFTDPKG
SRAGIGSLLLGVHDSGGRLRYAGNVGTGFDARTLGALRTQLDALRADSAPFENVPAGVKG
HWVRPKLVAEVSFGSWTREGRVRHAVFHGLRTDKPARAVSVERPATPAANGKPAATTAKH
AGTRPKAAAKRTTAAGGKVAISHAERVIDTASGLTKGDLVRYYERAAPLILPHLRGRPIA
MVRAPSGVGGEQFFQRHSDTLRVDGLNVLDPGLWPGHPALLEIASAEALVAAAQLNVVEF
HTWNAGKRSIERPNRIVFDLDPGEGVPWPQMQEAAALMKALLDELGLASFLKTSGGKGLH
VVVPITPRAGWDEVKAFAHDAVRHVAATVPQRFVAKSGPSNRVGKIFIDYLRNGIGATTV
AAFSARARPGLGVSMPVWWEELDSLQGAAQWTVANAGPRLDAVAADDPWADYAETRQAIT
RAAARLARAR
NT seq
2733 nt
NT seq
+upstream
nt +downstream
nt
atggccaagaccacgcgaccgacagcgccaaaggatcccggcaaacgccgcgccgcggca
aaaggcgccggcaagcccaccggcaagcgcgccagcacggcccgcccggcggcacgcggc
gcgccagccgccaaggccgctcccgccgcgctcgacaaataccgtcgcatgcgcgacttc
ggcgccacgcctgagcccagcggcgccgcgcgcacccgcggcaaggtgcacaagcgcgcc
ggcgagctttccttcgtgatccagaagcacgcggcgcgtcggctgcactatgactttcgc
ctcgaactcggcggcgcgctgaaaagctgggccgtgcccaaggggccgagcctggacccg
gccgacaagcgcatggccatccatgtcgaggaccatccgctggactatgccggcttcgag
ggcgtaatccccgccggccactatggcgccggcacggtcatcgtctgggaccgcggcacc
tggttgccggtaggcgatgccgaggccggctaccgcgccggcaagctgaagttcgagctg
cgcggtgaaaagctgcacggtcactggaccctggtgcgcatgcacggcagccggcagaag
gagcaggacgcctggctgctgatcaaggagcgcgacgagaccgccgtgccggcatcggag
ttcgatgtggtcgaggccttgccggacagcgtgctgggcggcacgcagcgcaaacccgcg
gcaaagcgcgcgaagtccgcgcagccgcctgacgaagccgcaccagatgcacacggcacg
gcgaaatccctgaagccgccgcgcggcgcgccgcgcgcggccttgccgctggcgctggcg
ccgcagctggccacgctggtggagcagcctccgtccgacgcgcaggcgtggcgctacgag
atcaagttcgacggctaccggctgctggcccgcatcgacggcaaggatgtgcgcctgttc
acgcgccagggcaacgactggaccagcaagctgcgtgcgctggcgcgcgacgtcggcacc
ctgggcctgcccgatggctggctcgatggcgagatcgtggtgctcggcaagcatggcgcg
accgacttccaggcgctgcagaatgccttcgataccgcgcgcgtcgagggcatccagtat
ttcgtgttcgacctgccctactttgccggccatgacctgcgcaaggtaccgctggtggag
cggcgcgccctgctgcgccggatcttcgcgcacaacacctcgccgcgcctgcagttcagc
gaggacttcgaggccggccctgccgacatgctcgaggcagcctgccgcatgaagcttgaa
ggcgtgatcggcaagcgcgccgacgccgcctatgtcagcgcgcgcaccagtacgtggatc
aagctgaaatgcaccttgcgccaggagttcgtggtggcgggcttcaccgacccgaagggc
agccgcgccggcatcggctcgttgctgcttggcgtgcacgacagcggcgggcggctgcgc
tacgcgggcaatgtcggcaccggcttcgacgcgcgcacgctgggcgcgctgcgcacgcag
ctggacgcgttgcgcgccgattccgcgccctttgagaacgtgcctgcaggcgtaaagggg
cactgggtgcggccaaagctggtggccgaggtctcgttcggcagctggacccgcgaaggc
cgcgtgcgccatgccgtgttccacggcctgcgcaccgacaagcccgcgcgcgcggtgtcg
gtggagcggccggcaacgccggcggccaacggcaagcccgcggcaaccacggcaaagcat
gccggcacacggccgaaggcggcggcaaagcgcaccaccgccgccggcggcaaggtcgcg
atcagccatgccgagcgcgtcatcgacacagcatccggcctgaccaagggcgacctggtg
cgctactacgaacgcgccgcgccgctgatcctgccgcacctgcgcgggcgaccgatcgcg
atggtgcgcgcgccatcgggcgtgggcggcgagcagttcttccagcggcatagcgacacg
ctgcgggtggacggcctcaacgtgctcgatccgggcctgtggcctgggcatcccgcgctg
ctggaaatcgcgtcggccgaagccctggtggccgcggcacagctcaatgtggtggagttc
cacacctggaacgccggcaagcgcagcatcgagcgccccaaccgcatcgtcttcgacctg
gacccgggcgaaggcgtgccctggccacaaatgcaggaagccgccgcgctgatgaaggcg
ctgctcgatgaactcggcctcgccagcttcctgaagaccagtggcggcaaggggctgcac
gtggtggtgccgatcacgccgcgtgccgggtgggacgaggtgaaggcgttcgcgcatgac
gcggtgcgccatgtcgccgccaccgtgccgcagcgcttcgtggccaagagcggtccaagc
aaccgcgttggcaagattttcatcgattacctgcgcaatggcataggcgccaccacggtg
gcggcattctcggcgcgggcacgcccggggctgggggtatcgatgccggtgtggtgggag
gaactcgatagcctgcaaggcgcggcgcagtggaccgtggccaatgccggcccgaggctc
gacgccgtggcggccgacgacccatgggcggactacgccgaaacccggcaggcgatcacg
cgcgccgcggcgcgactggcacgcgcccgatag
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