Rhizobium etli bv. mimosae IE4771: IE4771_CH03419
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Entry
IE4771_CH03419 CDS
T03310
Name
(GenBank) ATP-dependent RNA helicase protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
rei
Rhizobium etli bv. mimosae IE4771
Pathway
rei03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rei00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IE4771_CH03419
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rei03019
]
IE4771_CH03419
Enzymes [BR:
rei01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
IE4771_CH03419
Messenger RNA biogenesis [BR:
rei03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
IE4771_CH03419
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_RecD
HEM4
AAA_19
Flavi_DEAD
AAA_22
Snf7
Motif
Other DBs
NCBI-ProteinID:
AIC28501
UniProt:
A0A060IA21
LinkDB
All DBs
Position
3388012..3389715
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AA seq
567 aa
AA seq
DB search
MKPDRMVRSGHSRCGAPKGYALTNFESLGVSKPIVATLFQLGIETPTPIQEQAIPLLLQG
RDLIGLAQTGTGKTAAFGLPLIEKLLADERRPDNRTTRTLILAPTRELVNQIADNLKKFI
RKSHLRINVVVGGVSINKQQLQLEKGTDVLVATPGRLLDLVNRRAITLTTVRYLVLDEAD
QMLDLGFVHDLRKIAKLVPKKRQTMLFSATMPKAIADLAGEYLVDPVKVEVTPPGKAADK
VEQYVHFVAGKNDKTELLRKSLTENPDGRAIVFLRTKHGAEKLMKHLDNIGYSVASIHGN
KSQGQRERALKAFRDGSIKTLIATDVAARGIDIPAVSHVYNYDLPEVPDAYVHRIGRTAR
AGRDGIAIAFCAPDEAKLLRDIERLMGIDIAVASGEPPANVSNSGPRRGNGNGNNRNRGG
GHGREGQGREGQGRGEGRGDANRSEHRGSRQERRPRPERTGRNEDFRGQRRGEAAPDLGP
DNDLVSTSDFRPSAKPQRPAHGAHANGEPSGHHRGNNRHAHGRPARKHGEDRGQHQAQGG
EPRREGNGSNRRGGSGSRNGGQRRERA
NT seq
1704 nt
NT seq
+upstream
nt +downstream
nt
atgaaaccggatcgcatggtgcgttccggccatagtcgttgtggcgccccgaaaggttat
gccttgactaattttgaatcgcttggtgtctccaagccgatcgtcgccaccttgttccag
ctcggcatcgaaacgccgacgccgatccaggaacaggccatccccctcctcctccagggc
cgagacctgatcggtcttgcccagaccggcaccggcaagaccgccgccttcggcctgccg
cttatcgaaaagctgcttgccgacgagcgtcgccccgacaaccgcacgacgcggacgctg
atcctggcaccgacccgcgagctggtgaaccagatcgccgacaacctgaagaaattcatc
cgcaagtcgcatctgcgcatcaacgtcgtcgtcggcggcgtctcgatcaacaagcagcag
ctgcagctggaaaagggcaccgatgtcctggtcgccacgcccggccgtctgctcgacctc
gtcaatcgtcgcgccatcaccctgacgaccgtgcgctacctggtgctcgatgaagccgac
cagatgctggacctcggtttcgtgcatgatctgcgcaagatcgccaagctggtgccgaag
aagcgccagacgatgctgttttcggccaccatgccgaaggcgatcgccgatctcgccggc
gaatatctcgtcgatcccgtcaaggtcgaagtcacgcctccgggcaaggctgccgacaag
gtcgagcagtatgtgcatttcgtcgccggcaagaacgacaagaccgaactgctgcgcaag
tctctgaccgaaaatcccgacggccgcgccatcgtcttcctgcgcaccaagcacggcgcc
gagaagctgatgaagcatctcgacaatatcggctattccgtcgcctcgatccacggcaac
aagagccagggccagcgcgagcgggcgctgaaggccttccgcgacggcagcatcaagaca
ctgatcgccaccgacgttgccgcccgcggcatcgacatcccggccgtcagccacgtctac
aactacgacctgcccgaagtgcccgacgcctatgttcaccgcatcggccgcacggcgcgc
gccggccgcgacggcatcgccattgccttctgcgcccccgacgaagccaagctgctgcgt
gatatcgagcgcctgatgggcatcgacatcgcagtcgcaagcggcgaaccgccggccaat
gtcagcaatagcggcccccgccgcggcaacggcaatggcaacaaccgcaaccgcggtggc
ggccacggtcgcgaaggtcaaggtcgcgaaggccagggtcgcggcgaaggccgtggcgat
gcgaaccgctcggagcatcgcggcagccgccaggaacgccgcccgcgtcccgagcggacc
ggccgcaacgaggatttccgcggccagcgccgcggcgaagcggccccggacctcggcccc
gacaatgacctggtctcgacctccgacttccgcccctcggcaaagccgcagcggcccgcg
catggcgcccatgccaatggcgagccgagcggtcatcaccgcggcaataaccgccacgcc
cacggccgcccggcccgcaagcacggtgaagaccgcggccagcatcaggcccaaggcggc
gaaccacggcgcgagggcaatggcagcaaccgccgcggcggctccggctcccgcaatggc
ggccagcgccgcgaacgcgcctga
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