Reichenbachiella agarivorans: N6H18_05535
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Entry
N6H18_05535 CDS
T08483
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
rek
Reichenbachiella agarivorans
Pathway
rek03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rek00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
N6H18_05535 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rek03400
]
N6H18_05535 (mfd)
Enzymes [BR:
rek01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
N6H18_05535 (mfd)
DNA repair and recombination proteins [BR:
rek03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
N6H18_05535 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
UXP33413
LinkDB
All DBs
Position
1309977..1313333
Genome browser
AA seq
1118 aa
AA seq
DB search
MKSKELLSIYRADSQVKGLADCIKANENTHVSIKGLVGSMDAVVAAAVFETNHQNHIFVL
HEKEEAAYFHNDLQNLLGDKEVLLFPSSYKRPYQFEETENANILMRAEILNRINNKASSG
EIIVTYPEALTEKVINKKSLVENTWTAKVGETVDIVFLTELLITYGFEQDDFVYEPGQFA
VRGGILDVYSYAGELPYRIELFGDDIESIRTFDPETQLSKDALKTVNIIPNIQTKLLEEW
RQSFMDYVPKNSKIWIKDLQHTLDVIDKYFEKATVNFDDIMEASGQSGIVLRPDLLFETP
ESFQTAIEKYAKIEFGNRYSGDAKHSFSFEVSAQPSFQKNFEIMAESFESYQQKDYATII
SSDSEKPIQQLQSIFEEINPFIKFDNIILSLREGFIDHNQRIALFTDHQLFERFHKYALR
KKHSKSKALTLKELRTLNPGDYIVHVDYGIGRFAGLDTVEVNGNKQDAVRIVFRDDDLLY
LSIHSLHKISKYSGKESGPPQMSKLGSPEWENKKKKVRSKVKDIAKELIALYAKRKAAPG
FAFGKDTYHQTELETSFVYEDTPDQASASEDVKIDMQKAHPMDRLVCGDVGFGKTEVAIR
AAFKAAIEGKQVAVLVPTTILAMQHYHTFKGRLDSFAVVVEYINRFRTTKEIKDVLQRVK
EGKVDILIGTHRIVNKDVQFHDLGLLIIDEEQKFGVKIKDKLKEIKVNVDTLTLSATPIP
RTLHFSLMGARDLSIIATPPPNRQPVTTELHTFSEEVTRDSISFELRRGGQVFFVHNKVS
DIESIANLIHRLVPDARVGVAHGQMDGPKLEKVMLKFIEGEYDVLVSTNIIESGLDIPNA
NTIIINSAQNFGLSDLHQMRGRVGRSNKKAFCYMFTPPTSKLSTDARKRLSALEEFSDLG
DGFKVAMRDLDIRGAGNLLGGEQSGFITDIGFDMYHKILDEAVQDLKENEFKELFADQDK
DLSKTLINDCVIETDLEILIPEDYVKNITERLSLYTQLDNIKTNSELAIFTQSIQDRFGK
IPKSVLALFETVKLRWIAIDLGFEKLVIKSGKMRCYFPPQENDRYYTSPIFGKVMSYIQQ
HPKDYQIKEMKGKLMLIITGVEEIEIAIQQLGNIKSSF
NT seq
3357 nt
NT seq
+upstream
nt +downstream
nt
ttgaaaagtaaggaacttctctccatctatcgagctgatagtcaagtcaaaggcctggca
gattgcatcaaagccaacgaaaatacccacgtcagtatcaaaggactcgttggtagtatg
gatgctgtcgtcgcagcggccgtttttgaaaccaatcaccaaaaccacattttcgtcctt
cacgagaaagaagaagcggcctattttcataatgatcttcaaaatcttttgggagacaaa
gaagtacttctatttccgtcctcctacaaaaggccctatcagtttgaagagacagaaaat
gccaacatcctgatgagggcagaaatcctcaaccgcatcaacaacaaagcctcctctggc
gaaatcatcgtcacctatccagaggctctcaccgaaaaggtaatcaacaaaaaatcgctg
gtagaaaatacctggactgccaaagtgggtgaaaccgtcgatatagtgttcttgactgag
ctgttgatcacctacggtttcgaacaagatgattttgtctatgagccgggccagtttgcg
gtccgtggcggaatcttggatgtatattcctatgcaggagagctaccctatcggatagag
ctattcggagatgatatcgaaagcatccgtactttcgatcccgaaacacagctatccaaa
gacgccctgaaaaccgtcaacatcatccccaacatacagaccaaattgctggaagaatgg
agacagtctttcatggattatgtcccaaaaaactccaaaatatggatcaaagatctacaa
catacgctggatgtaattgataaatattttgaaaaagcgaccgtcaattttgatgacatc
atggaggccagtggacaatcagggattgtgctaagacctgacttgcttttcgaaacccct
gaatcttttcaaacagctattgaaaaatacgccaagattgaatttggcaatcgctactca
ggtgatgccaaacatagcttttcgtttgaggtcagcgcacagccctcgtttcagaagaat
ttcgaaatcatggctgagagttttgagagctatcagcaaaaggattatgctaccattatt
tcttcggattccgaaaaacccattcaacaactacaatccatttttgaagaaatcaatccc
ttcatcaagtttgacaacattatcctcagtttgagagaggggttcatagaccacaaccaa
aggatcgcattattcacagatcatcagttgtttgagcgctttcataagtatgcgctccga
aaaaaacattcaaaatccaaagcacttaccctcaaggaactccgtactctcaatcctggg
gattacatcgtccatgtggattatggaatcgggcgatttgcaggattagatactgtagaa
gtcaacggcaacaaacaagatgctgttagaatcgtcttccgtgatgacgatctgttgtat
ctgagtatccactctctacacaaaatctccaaatacagtggcaaagaaagtgggcctccg
cagatgagcaaacttggctcaccagagtgggaaaacaaaaagaaaaaagtacgcagcaaa
gtcaaggacatcgccaaagagctgattgcactgtatgcaaaacgaaaagctgccccaggt
tttgcgttcggcaaggatacttatcaccagaccgagttggagacgtccttcgtctatgaa
gatacacccgatcaagcctctgcatccgaagatgtcaagatcgacatgcaaaaagcacat
ccgatggacagactggtttgtggagatgtaggctttggtaaaacagaagttgcgattcga
gctgctttcaaagcagctatcgagggcaaacaagtagctgtattggtacctacgacgatt
ttggccatgcagcattaccatactttcaagggtcgtctggacagttttgccgtcgtggta
gagtacatcaaccgcttccgtacgaccaaagaaatcaaagatgtcctccagcgagtcaaa
gaaggaaaagttgatattctgatcggtacacaccgtatcgtcaacaaagacgtgcagttt
catgacttgggtctgttgatcatcgatgaggaacaaaaatttggtgtcaaaatcaaagac
aaactcaaagagatcaaagtcaacgtcgatacacttacactcagcgcaacgcccattcct
cggacgctgcacttttcgctgatgggggcaagagatttgagtatcatcgctacccctcct
ccgaatcgtcaaccagtcaccacggaactacataccttcagtgaggaagtcaccagagat
tctatcagttttgagttgcgtcgtgggggtcaggtatttttcgtacacaacaaagtgagt
gatatcgaaagtatagccaatctgattcatagattggtaccagatgcacgagtcggtgtg
gctcatggccaaatggatggacccaaactggaaaaagtcatgctcaaattcatcgaaggt
gaatatgatgttttggtttctaccaacatcatcgagtcaggtttggacatccccaatgcc
aacaccatcatcatcaactcagcgcagaatttcggcttgtccgatctccatcagatgaga
ggtcgagtcggtcgctccaacaagaaagcattttgctacatgtttacgcctcctacctcc
aagctatctacagatgcacgcaaaagattgagtgctttggaggaattttcggatctagga
gatggattcaaagtcgccatgcgagatctcgatatccgcggagcgggcaatttgctcggt
ggagagcagagtggcttcatcaccgatattgggttcgacatgtaccacaagattttggac
gaggcagtccaagacttgaaagaaaacgaattcaaagagttgtttgcagatcaagacaaa
gacctaagcaaaacactcatcaatgactgtgtgatagagactgatttggaaattttgatt
ccagaagactacgtcaaaaacatcactgagcgactgagcctctatacacaactggacaac
atcaaaaccaacagtgagctggcgatatttacccaatcgatccaagatcgcttcggaaaa
attccgaaatcagtactggccctattcgaaaccgtcaaattgcggtggattgccattgat
ttgggatttgaaaaactagtgatcaaaagcggcaaaatgcgttgctattttccaccacaa
gagaatgacagatactatacttcccccatttttggcaaagtgatgtcctatattcagcag
caccccaaagactatcagatcaaggagatgaaaggaaaactcatgctgatcatcacagga
gtagaagaaatagaaattgcgatccaacaattgggcaatatcaaatcttcattttaa
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