Rhizobium etli bv. mimosae Mim1: REMIM1_CH03205
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Entry
REMIM1_CH03205 CDS
T02778
Name
(GenBank) ATP-dependent RNA helicase protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
rel
Rhizobium etli bv. mimosae Mim1
Pathway
rel03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rel00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
REMIM1_CH03205
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rel03019
]
REMIM1_CH03205
Enzymes [BR:
rel01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
REMIM1_CH03205
Messenger RNA biogenesis [BR:
rel03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
REMIM1_CH03205
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_RecD
HEM4
AAA_22
Flavi_DEAD
AAA_19
Motif
Other DBs
NCBI-ProteinID:
AGS22955
UniProt:
S5RZL9
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All DBs
Position
3183340..3185022
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AA seq
560 aa
AA seq
DB search
MKPDRMVRSGASRCGAPKGYTLTNFESLGVSKPIVATLFQLGIETPTPIQEQAIPLLLEG
RDLIGLAQTGTGKTAAFGLPLIEKLLADERRPDNRTTRTLILAPTRELVNQIAENLKKFI
RKSPLRINVVVGGVSINKQQLQLEKGTDILVATPGRLLDLVNRRAITLTTVRYLVLDEAD
QMLDLGFVHDLRKIAKLVPKKRQTMLFSATMPKAIADLAGEYLVDPVKVEVTPPGKAADK
VEQYVHFVGGKNDKTELLRKSLTENPDGRAIVFLRTKHGAEKLMKHLDNIGYSVASIHGN
KSQGQRERALKAFRDGSIKTLIATDVAARGIDIPAVSHVYNYDLPEVPDAYVHRIGRTAR
AGRDGIAIAFCAPDEAKLLRDIERLMGIDITVASGEPPAHISAGGPRRGNGNGNNRNRGG
GQGRGEGRGDQNRSEHRGSRPERRPRPERPGRNEDFRGQRRGEAAPDFGPDNDLASTSDF
RPAKPQRPAHNGRNGHHANGEPSGHHRGNGRHAHGRPARKHGEDRGPHQAQGAEQRRDGN
GGNRRGGSGSRNGGQRRERA
NT seq
1683 nt
NT seq
+upstream
nt +downstream
nt
atgaaaccggatcgcatggtgcgttccggcgctagtcgttgtggcgccccgaaaggttat
accttgactaattttgaatcgcttggtgtctccaagccgatcgtcgccaccttgttccag
ctcggcatcgaaacgccgacgccgatccaggaacaggccatccctctcctgctcgaaggc
cgcgatctgatcggccttgcccagaccggcaccggcaagaccgccgccttcggcctgccg
ctcatcgaaaagctgctcgccgacgagcgccgccccgacaaccgtacgacgcggacactg
atcctggcgccgactcgcgagctggtgaaccagatcgccgagaacctgaagaagttcatc
cgcaagtcgccgctgcgcatcaacgtcgttgtcggcggtgtgtcgatcaacaaacagcag
ctgcagctcgaaaagggtaccgatatcctcgtcgccacgcccggccgcctgctcgacctc
gtcaaccgccgcgccatcacgctgacgacggtgcgttatctcgtgctcgacgaggccgat
cagatgctcgacctcggcttcgtgcacgacctgcgcaagatcgccaagctggtgccgaag
aagcgccagaccatgctgttttcggccaccatgccgaaggcgatcgccgatctcgccggc
gaatatctcgtcgatcccgttaaggtcgaagtcacgccgcccggcaaggctgccgacaag
gtcgagcagtatgtccatttcgtcggcggcaagaacgacaagacggaactgcttcgtaag
tcgctgaccgaaaaccccgacggccgcgccatcgtcttcctgcgcaccaagcatggcgcg
gagaagctgatgaagcatctcgacaatatcggctattccgtcgcctcgatccacggcaac
aagagccagggccagcgcgagcgggcgctgaaggccttccgcgacggcagcatcaagaca
ctgatcgccaccgacgtcgccgcccgtggcatcgacatccccgccgtcagccacgtctac
aactacgacctgcccgaggtgccggacgcctatgtccatcgcatcggccgcacggcgcgc
gccggccgcgacggcatcgccatcgccttctgcgctcctgacgaagccaagctgctgcgt
gatatcgagcgcctgatgggcatcgacatcacggtcgcaagcggcgaaccgccggcacat
atcagcgccggcggcccgcgccgcggcaacggcaatggcaacaaccgcaatcgtggtggc
ggccagggccgcggcgaaggccgtggcgatcagaatcgttcggagcatcgcggcagccgc
cccgaacgccgcccgcgtcccgaacgcccaggccgcaacgaggacttccgcggtcagcgc
cgcggcgaagcagccccggatttcggccccgacaacgatctggcttcgacctccgatttc
cgcccggcaaagccgcagcgccctgcgcataacggccgcaatggccatcatgccaatggc
gaaccgagcggccatcaccgcggcaacggccgccacgctcacggccgcccggcccgcaag
cacggcgaagaccgcggaccgcatcaggctcagggcgccgaacagcgccgcgacggcaat
ggcggcaaccgccgcggcggctcgggttcccgcaacggtggccagcgccgcgaacgcgcc
tga
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