Rhizobium etli bv. mimosae Mim1: REMIM1_PC00076
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Entry
REMIM1_PC00076 CDS
T02778
Name
(GenBank) ATP-dependent DNA ligase protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
rel
Rhizobium etli bv. mimosae Mim1
Pathway
rel03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
rel00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
REMIM1_PC00076
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rel03400
]
REMIM1_PC00076
Enzymes [BR:
rel01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
REMIM1_PC00076
DNA repair and recombination proteins [BR:
rel03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
REMIM1_PC00076
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
DNA_ligase_OB_2
Motif
Other DBs
NCBI-ProteinID:
AGS24432
UniProt:
S5SQX0
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All DBs
Position
pRetNIM1c:complement(69831..70895)
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AA seq
354 aa
AA seq
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MTTRRKASMPLLDESGSTLQSRPVRKRDPAQPSLPFDPMPARIEPCLALLKPAPPKGPDW
LFEVKWDGYRLALHIDRKGVKVITRGGHDWTHRFPAIVDAARALGVNSAILDGEAVVLDD
QGRSDFGALQRSLGGRGGKKVSDEAILYAFDLLYLDGHDLTGTELSVRRHLLEDLISPTS
ESAVRLSQEMAVDGDALLEHACRAGLEGIIAKHRDRPYRSGRTGDWQKIKCIQSESFMVV
GYERSASARGSIGSLLLAARNGYDWTYVGSVGTGFSTNDAEYLRKTLDKLKTAKPAVPLK
GKNFVFAQPTVIAEIEFRGWTHDGNLRHASYKGLREVQDNAAVFDIADRPGPNE
NT seq
1065 nt
NT seq
+upstream
nt +downstream
nt
atgacgacaagacgcaaagcctcgatgccgctgctcgacgaatccggctcgacccttcag
tcgcgcccggttcgaaagcgcgatcccgcccagccgagcctgcccttcgatccgatgccc
gcgcgcatcgagccctgcctggcgcttttgaagccggcgccgcccaagggtcccgactgg
ctgttcgaggtgaaatgggacggatatcgcctggcgcttcatatcgatcggaagggtgtg
aaggtcatcacgcgaggcggccacgactggacgcaccgctttccggcaatagtcgatgcg
gcgcgtgcacttggggtgaacagcgccattctcgacggcgaagcggtcgtgcttgacgat
caaggccggtcagacttcggcgcgctgcagcgctcgctaggtggccgcggcggcaagaag
gtgtcagacgaagcgatcctctatgcgttcgatcttctctatcttgacggccacgacctg
accggcaccgagctttcggtgcggcggcatctgctggaggatctgatttcaccgacaagc
gagagcgcggttcgcctgtcgcaggagatggcggtggacggcgatgccctattggagcac
gcatgtcgggcagggcttgaaggcatcatagccaagcaccgcgaccgcccttatcgctcc
gggcgcaccggcgattggcagaaaatcaagtgcatccaaagcgagagcttcatggtcgtc
ggctatgaacggtcggcttcggcacgcggtagcatcggcagcctgctgcttgcggcacgc
aacggttatgactggacctatgtcggctccgtcggtaccggcttcagcacgaacgatgcc
gagtacctgcgcaagaccttggacaagctgaagacagcgaagcccgccgtgccgctcaaa
ggcaagaacttcgtctttgcccagccgaccgtgattgccgaaatcgagttccgcggctgg
acgcatgacggcaaccttcgtcatgcctcctataagggtttgcgggaagtccaggacaat
gccgccgtgtttgatatcgccgatcgcccggggccgaacgagtag
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