Rickettsiales endosymbiont of Stachyamoeba lipophora: EF513_00345
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Entry
EF513_00345 CDS
T05750
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ren
Rickettsiales endosymbiont of Stachyamoeba lipophora
Pathway
ren03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ren00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
EF513_00345 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ren03400
]
EF513_00345 (mfd)
Enzymes [BR:
ren01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
EF513_00345 (mfd)
DNA repair and recombination proteins [BR:
ren03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
EF513_00345 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
MFD_D3
SNF2-rel_dom
UB2H
Motif
Other DBs
NCBI-ProteinID:
AZL15019
UniProt:
A0A3Q8T184
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All DBs
Position
complement(84509..87937)
Genome browser
AA seq
1142 aa
AA seq
DB search
MAKNYIANIPKNSFGYVVSNIIKTNSNKTNIILAKDEEEQILLTDQLKSLRPGEEVYPFY
AWDTLPYDRVSPHFEILAERIFILDKLLNFSENTQTLNIVTTYNALQQKLIPKIILEIWP
IKLVRGFKLGRDHLTEKLITLGYNRSETANEVGDFAVRGGIIDFVTAGNVGIRVDFFGDN
IDEIKQFDPSTQLTLSKLDSFTLLPVNEILFDNEALESFKTNYTKQFTITQNDYLYHNLV
ESQKFPGFENWLPFFYEELSTFFDYLPTDPIFYYYKDDIGLIETFSKKVSDTYQLRLNTS
SKENVYNPVNPQQLYLTSKEIEDILEAYQVNVFSQFDLANNVSNQKIAALLFNKSKNPYE
QLKEYQIADGVKKRKKIIVACNSTGSLERLRIILTNHEFFIVEIDNIHDLSKVSGKTLGI
TIFPITNGFETENLIIVSEQDLLGEKLKRKATSKAKIENFLLEANSLSEGELIVHKNHGI
GKFIGLETINVNNHPHDCVKLIYAGEDKLYIPVENIDLLSKYGSDESAALDKLGTAAWQA
RTAKLKQRIKLQAEAIIKLAAERSLKEAPSLMPPLSLYEEFCTKFPYAETDDQLTAIDDI
LQDFTSGKPMDRLICGDVGFGKTEVAMRAAFAALFGLVEQNGEKSQIAIIAPTTLLARQH
YNNCLKRFEGLPVRIKQLSRLVSAKEATKVRTELSEGSIDIIIGTHALLAENIKFKNLNL
VIIDEEQHFGVAQKEKLKKFKANIHVLTLSATPIPRTMHMAISGMRDLSLIATPPVDRLA
TKTFVMPYDPIIMREAVLNEKHRGGRIFYVAPRVSDLKQIEDNLKEQVPEIKYKVAHGQM
SPVDLDKIMNGFYDGEFDLLLSTTIVESGLDVPAANTIIIHRADMLGLAQLYQLRGRVGR
GKIRAFCYFTTPPIHILTSAAKKRLEVLSKLDSIGAGFSLASHDMDIRGVGNLLGDEQSG
QIKEVGVELYQEMLKEAIEELRFKQDHTTEATDKIYEKYSPQINLGLPVLIPEKYVSDLN
LRLGLYRRIAAITTREELDSFYAEMIDRFGPIPENTKHLFTIIELKQLCLQANIEKIDSG
PKGIVITFHKNQPKNLDKLLNYIKIDPINTKLRPDHKFVIMREFKDDLHKVEVMKKMLGN
II
NT seq
3429 nt
NT seq
+upstream
nt +downstream
nt
atggctaagaattatattgcaaatatacctaaaaacagttttgggtatgtggttagtaac
ataattaaaaccaactcaaataaaacaaacatcatcttagcgaaagatgaagaagagcag
atattacttactgatcaattaaaatcgttgcgaccgggagaggaagtatatcctttttat
gcatgggatacattaccgtatgatagggtttcgcctcactttgaaattttagctgaacgt
atttttattctggataaactgctaaattttagtgaaaatactcaaaccttaaatattgta
actacttataatgccttgcaacaaaagctaattcctaaaatcattttagaaatttggcca
attaagttggttagaggttttaaactaggtagagaccatcttacagaaaagttaattaca
ttaggctataaccgcagtgaaacggctaatgaagttggagattttgcagtcagaggtgga
attattgattttgttaccgccggtaatgtagggatacgggttgatttttttggtgataat
attgatgaaattaagcagtttgatccttctactcagcttactcttagtaagcttgatagc
tttacattattaccggttaatgaaattctctttgataatgaagcgttagaaagctttaaa
actaattatactaagcagtttaccattacacagaatgattatctttatcataatctagtt
gaaagccaaaaattccctggatttgagaactggttgccatttttttacgaagaattgtct
actttttttgattatctaccaacagatcccatattttattattataaagatgatatagga
ttaatagaaacctttagtaaaaaagtgagtgatacttatcaattaagattaaatacgagc
tctaaggagaatgtatataatcctgttaatcctcagcaactttatttaactagcaaagag
atagaagatattttagaggcttatcaggttaatgtgttctcacaatttgatttagcaaat
aatgtcagtaatcaaaaaatagcagccctgctatttaataaatctaaaaatccatatgaa
cagctaaaagaatatcaaatagctgatggtgtaaaaaaaagaaaaaagataatagttgcc
tgtaattctacaggttctctagagagattaagaatcattttaactaaccatgaattcttt
atagttgaaattgataatattcatgatttaagcaaggtaagtggtaaaactcttgggatt
actatttttcctattactaacggctttgaaactgagaatttaattatagttagtgaacaa
gatttacttggtgaaaagttaaagcgtaaggcaactagcaaagctaaaattgaaaatttc
ttgcttgaagcaaattcacttagtgagggtgaactaattgttcataaaaatcatggtatt
ggtaaatttatagggcttgagactattaatgtaaataatcatccgcatgattgtgtaaaa
ttaatctatgcaggtgaagataaattatatattccggttgaaaacatagatttgctttcg
aaatatggcagtgatgaaagcgctgctttagataagttgggtacagcagcatggcaagcc
agaacagcaaaacttaagcagcgtattaaactacaggctgaagcaattattaagctggca
gccgaaagaagtttaaaagaggctcctagtttaatgccgccattaagcctttatgaagaa
ttttgtactaaatttccctatgctgaaaccgatgatcaattaactgcaattgatgatatt
ctacaagattttacttcaggtaagccaatggatcgtttaatttgtggtgatgttggtttt
ggtaaaacagaagtggcgatgcgtgcagcatttgcagcactttttggattggttgagcaa
aatggtgaaaaatctcaaatagctattattgctcctactactttattggcaaggcagcat
tataataattgcttaaaacgctttgaaggattaccagtaagaataaaacagctttcaagg
ttagtctcagccaaagaagcaaccaaggttagaacagaattatctgaaggtagcattgat
attattattggtacgcatgcacttcttgcagaaaatattaaatttaaaaatttaaattta
gttataattgatgaagaacaacattttggtgtagcacagaaagaaaagcttaaaaagttt
aaagctaatattcatgtgttaaccctttcagcaacgcctattcctcgaacgatgcatatg
gcaatttcagggatgcgagatttaagtcttattgctacccctccagtagataggcttgct
actaaaacttttgtcatgccatatgatccgatcattatgcgtgaagctgtattaaatgag
aagcataggggtggtaggattttttatgtggctcctagagtttctgatttaaagcaaata
gaagataatttaaaagagcaagtgccagaaattaaatataaggtggctcacggtcaaatg
agccctgttgatctggataagatcatgaacgggttctatgatggtgagtttgatctgtta
ttatctactactattgttgaatcagggctagatgtgcctgctgccaatactattattatt
caccgtgctgatatgttaggacttgctcaactttaccagctgaggggtagagtaggaaga
ggtaagataagagcgttttgttattttactactcctccaattcatatattaactagcgct
gctaaaaaaagactagaagtacttagtaagttagatagtatcggggcaggatttagttta
gcaagccatgatatggatataaggggtgtagggaacttactaggtgatgaacagtccggg
caaattaaagaggtaggcgttgaactttatcaagaaatgcttaaagaagctattgaggaa
ttaaggttcaagcaagatcatactacagaagctacagataaaatatatgaaaaatatagt
ccgcaaattaatctaggattaccggtgcttattcctgagaagtatgtaagcgatctaaac
ttaagattgggtttatataggcgtattgctgccattactacccgcgaggagttagatagt
ttttatgcagaaatgattgatagatttggtccgattccagaaaataccaaacacttattt
actataattgagcttaagcagctttgcttgcaggctaatatagaaaaaattgattctggt
cctaagggaattgttattacttttcataaaaaccaacctaaaaacttagataagttactg
aattatataaaaatagatcctattaataccaaattgcgccccgatcataaatttgtgatt
atgcgtgaatttaaggatgatctccataaggtggaagtgatgaagaagatgttaggaaat
ataatttag
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