Candidatus Ruthia endofausta: HUE58_04715
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Entry
HUE58_04715 CDS
T06701
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
reo
Candidatus Ruthia endofausta
Pathway
reo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
reo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HUE58_04715
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
reo03019
]
HUE58_04715
03009 Ribosome biogenesis [BR:
reo03009
]
HUE58_04715
Enzymes [BR:
reo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HUE58_04715
Messenger RNA biogenesis [BR:
reo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HUE58_04715
Ribosome biogenesis [BR:
reo03009
]
Prokaryotic type
rRNA helicases
HUE58_04715
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
CMS1
Motif
Other DBs
NCBI-ProteinID:
QKQ24428
UniProt:
A0A6N0HQ06
LinkDB
All DBs
Position
829198..831021
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AA seq
607 aa
AA seq
DB search
MSENKSDQKPLSKFECLGLSNTILKILDVIGYETPSPIQEQCITHLLNGEDIIGQAQTGT
GKTAAFALPLLDKIDLNINAPQLLILTPTRELAIQVSEAVQTYARGMKGFHVLPIYGGQS
YDIQLRPLKRGVHAIVGTPGRVMDHIKKGTLKLDKLKSFVLDEADEMLKMGFINDIKWVM
ERIPEQRQIALFSATMPNVIKKVAEQFLNQPKIVKIKTKTETATSITQKYCMVGGLSQKL
EALTRILEVTTFDAMIIFVRTKTLTTELAEKLSARGFSAESINGDIQQNQRERIITNYKK
GKIDILIATDVAARGLDVERISHVVNYDIPQDAESYVHRIGRTGRAGRKGDAILFVSNRE
RRMLNTIERATRQKITPIELPSAKIINAKRIETFKQNIAQTINNQNLDTFEKLVSEFQQE
NPEIEVSKISAALAFIAQGNEPLLLSEKEPNFSGNRTPKEEEIPTKADPLKDFPKIPMCR
YKIEVGNNNNVKPGNILGAIANEADMNSEYIGSIQIFDHFSTIDLPDEMPNEVFEVLKKT
VVCGKRLNIVELTEKNNKATIGVRTGKRNFGRGKFSKEKSNNRRNNKDYHGKSKRDDKHG
RKPKFSR
NT seq
1824 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaaaataaatctgaccaaaagccattatccaaatttgaatgtttaggactgtct
aataccatcttgaaaatattggatgtcattggctatgaaaccccttctcccattcaagag
caatgcatcactcatttattaaatggcgaagatattatcggtcaagcccaaacaggcaca
ggaaaaacagcagcattcgccctgccactgcttgacaaaattgacttaaacattaacgca
ccacaattactaatcttaacacccacccgtgaacttgctattcaggtatcagaagcagta
caaacctatgcacgaggcatgaagggctttcacgtgctacccatttatggtgggcaatct
tatgatattcaactacgccctctaaagcgtggtgtacacgctattgttggtacgcctggt
cgagtgatggatcacattaaaaaaggcaccttaaaactagacaaacttaagtcattcgtt
ttagatgaagccgatgagatgcttaaaatgggttttattaatgatattaaatgggtaatg
gagcgcattccagaacaacgtcaaattgctttattttctgccaccatgccaaatgttatc
aaaaaagtggctgagcaatttttaaatcaaccaaaaattgttaaaataaaaaccaagaca
gaaacagcaaccagcattacccaaaaatactgcatggttggtggcttatcacaaaaatta
gaagccttaactcgcattcttgaagtgactacctttgatgcaatgattatcttcgttaga
accaaaacactcacaacagaattagcagaaaaattatccgcccgtggcttttcagcagaa
tctatcaacggcgatattcaacaaaaccaacgagaacgcattatcactaactacaagaaa
ggtaaaattgacatccttattgctaccgatgttgccgcacgtggtttagatgtagaacgt
atctcgcacgtagtcaattatgacattcctcaagacgccgaatcttacgtacaccgtatt
ggtagaacaggacgtgcaggtcgaaaaggtgatgcaattttattcgtatcaaaccgtgaa
agacgtatgctcaataccattgagcgcgctactcgccaaaaaatcacccccattgaacta
cccagtgcaaagattattaatgccaaacgcatcgaaacattcaaacaaaatatagcacaa
accatcaacaatcaaaacttagacacatttgaaaaattagttagcgaatttcaacaagaa
aatccagaaattgaagtctcaaaaatctctgccgccttagcattcattgcacaaggtaat
gaaccattgctattatcagaaaaagagccaaattttagcggcaatcgaacaccaaaagaa
gaagaaattcccaccaaggccgacccactaaaagactttcctaaaattccaatgtgtcgc
tataagattgaagtgggcaataataataatgtcaagccaggtaatattttaggtgctatt
gccaatgaggctgacatgaacagtgaatatattggctcaattcaaatttttgatcatttc
tcaaccattgacttgccagatgagatgccaaacgaggtatttgaggttttaaaaaagacc
gtggtttgtggaaagcgcttaaacattgtcgaactcactgagaaaaacaacaaggccact
attggagtacgaacgggaaaacgtaattttggtcgtggaaaattctccaaggagaaaagc
aacaatcgacgtaacaataaagactatcacggcaaaagtaaaagagacgacaaacacggc
agaaaaccaaaattttcacgctaa
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