Rhizobium etli bv. phaseoli IE4803: IE4803_CH02195
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Entry
IE4803_CH02195 CDS
T03667
Name
(GenBank) DEAD/DEAH box type DNA/RNA helicase protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
rep
Rhizobium etli bv. phaseoli IE4803
Pathway
rep03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rep00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IE4803_CH02195
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rep03019
]
IE4803_CH02195
03009 Ribosome biogenesis [BR:
rep03009
]
IE4803_CH02195
Enzymes [BR:
rep01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
IE4803_CH02195
Messenger RNA biogenesis [BR:
rep03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
IE4803_CH02195
Ribosome biogenesis [BR:
rep03009
]
Prokaryotic type
rRNA helicases
IE4803_CH02195
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
WHIM1
CMS1
Motif
Other DBs
NCBI-ProteinID:
AJC79391
LinkDB
All DBs
Position
complement(2188402..2190372)
Genome browser
AA seq
656 aa
AA seq
DB search
MTEFNGVVPAIAKALQKRGYAELTPVQKSMLDPDLAASDALVSAQTGSGKTVAFGLALAP
TLLEGRERFGNAGAPLALVIAPTRELALQVKRELEWLYEMTGAVIASCVGGMDIRSERRS
LERGAHIVVGTPGRLCDHIRRNALDMSELKAAVLDEADEMLDLGFREDLEFILDSAPDER
RTLMFSATVPAAIAKLAKSYQRDAVRISTAAEEKQHIDIEYRALMVAPSDRENAIINVLR
YYEATNAIVFCSTRAAVNHLTARFNNRNFAVVALSGELTQNERSHALQAMRDGRARVCIA
TDVAARGIDLPGLDLVIHADLPTNPETLLHRSGRTGRAGRKGISAMIVPLNARRKAERLL
ENAGISAAWARPPSAEEVNERDDERLLADPIFSEAPQEEEQGLVQQLLSSHGAEKLAAAF
LRLYRTNHSAPEDLIEVTVQDERSRKRRDNAEPYAPAQKGPREDFGPSVWFSVSVGRKQN
AEPRWLIPMLCRNGNVTKREIGAIKMQPEETYVEIAVASADGFQEALGPNKTLERGIRVT
RLSGMPDFSRAAAPKLYAGKSSRDERPGDGFRDERPKNKFGKGPGGGYAAADNTGGEKRD
SKPWSKKPGKSGFDGPKGDKPRYDKPKFEGAKSERPKYEGKGGAGPKSKFSKKKPG
NT seq
1971 nt
NT seq
+upstream
nt +downstream
nt
atgacagaattcaacggcgtcgttccggcgatcgccaaggcgttgcagaagcgcggttac
gccgaactcacccctgtgcagaagtcgatgctcgatcctgatcttgccgcgtccgacgct
ctggtttccgcccagaccggttccggcaagaccgtcgccttcgggctggcgctggcgccg
acgctgcttgagggtagggaacgcttcggcaatgccggcgctccgctcgccctcgttatc
gcgccgacgcgtgaacttgccctgcaggtgaaacgcgagctcgaatggctctatgagatg
accggcgcggtgatcgccagctgcgtcggcggcatggacatccgcagtgagcgccgttcg
ctcgaacgcggcgcccatatcgtcgtcggcacgccgggccggctctgcgatcatatccgc
cgcaacgcgctcgacatgtcggaactgaaggccgccgtgctcgacgaggccgacgagatg
ctcgatctcggcttccgggaggatctggaattcattctcgattcggcgccggacgagcgc
cggacgctgatgttttcggcgaccgtgccggcggcgatcgccaagcttgccaagagctat
cagcgcgacgcggtgcgcatcagcaccgctgccgaggaaaagcagcatatcgacatcgaa
tatcgcgcgctgatggtggccccgagcgaccgcgagaacgctattatcaacgtgctgcgt
tattacgaggcgaccaatgccatcgtcttctgttcgacgcgcgccgccgtcaaccatctg
accgcgcgtttcaacaaccgcaatttcgccgtggtggcgctctccggcgagctgacgcag
aacgaacgcagccatgcgctgcaggcgatgcgcgacggccgcgcccgcgtctgcatcgca
accgatgtcgccgcccgcggcatcgatctgccgggcctcgatctcgttatccacgccgac
ctgccgaccaatccggaaacgctgctgcaccgcagcggccgcaccggccgggccgggcgc
aaaggcatcagcgccatgatcgtgccgctgaatgcacggcgcaaggccgagcgtctgctg
gagaatgccggcatttccgcggcctgggcacggccgccgtcggccgaagaggtgaatgag
cgcgacgacgagcggctgctcgccgatccgatcttcagcgaagcgccgcaggaagaagaa
cagggtctggtacagcagctgctttccagccacggcgccgagaagctcgccgccgccttc
ctgcgtctctaccgcaccaatcattcggcgccggaggacctgatcgaggtcaccgtccag
gacgagcgcagccgcaagcgccgcgacaatgccgaaccctacgcgccggcacaaaaggga
ccgcgcgaggacttcggtcccagcgtgtggttctccgtctcggtcgggcgcaagcagaat
gccgagccgcgctggctgatcccgatgctctgccgcaacggcaatgtgacgaagcgtgag
atcggcgcgatcaagatgcagcccgaggaaacctatgtcgagatcgccgtagcaagcgcc
gacggtttccaggaagcgcttgggccgaacaaaacgctcgaacgcggcatccgcgtcacc
aggctttccggcatgccggatttcagccgcgcggcggcgcccaagctctatgccggcaag
tcgtcgcgtgacgaacggccgggcgatggcttccgcgacgagcggccgaagaataagttc
ggcaaaggtccgggcggcggatatgccgcggccgacaataccggcggggagaagcgggac
agcaagccctggagcaagaaaccaggcaagtccggcttcgatggcccgaaaggcgataag
ccgagatatgacaagccgaaattcgaaggcgccaaatctgaacgcccgaaatacgagggc
aagggcggcgccgggccgaagagcaagttttcgaagaagaagcccggctga
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