Rhizobium etli bv. phaseoli IE4803: IE4803_CH03783
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Entry
IE4803_CH03783 CDS
T03667
Name
(GenBank) ATP-dependent DNA ligase protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
rep
Rhizobium etli bv. phaseoli IE4803
Pathway
rep03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
rep00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
IE4803_CH03783
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rep03400
]
IE4803_CH03783
Enzymes [BR:
rep01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
IE4803_CH03783
DNA repair and recombination proteins [BR:
rep03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
IE4803_CH03783
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AJC80939
LinkDB
All DBs
Position
3829821..3830864
Genome browser
AA seq
347 aa
AA seq
DB search
MTRRAKPLLQDEHLLKSKPARRRDPTQPHLPFDPMPDRVEPCLALLKKVPPKGPDWAFEV
KWDGYRLAIHIEPKGVRIITRGGHDWTHRFPTIAEAARKLGVGTAILDGEAVVLDNEGHS
DFGALQRSLGGRGGKRSSTESVFMAFDLLYFDGHDLTGTELSVRRHLLEDFLDGVTGAIR
LSDEVFGDGAELLANACSMGLEGIIAKHRDQPYRSGRTGDWLKIKCVQSESFMIIGYEQS
TVARGGIGSLLLAARKERDWVYVGSVGTGFNARDAAYLRMSLDKIRTKRPAVALKGKNLV
FAQPTLIAEIEFRGWTDDGSLRHASYKGLREIQDNAAVFDMNEKPTE
NT seq
1044 nt
NT seq
+upstream
nt +downstream
nt
atgacccgccgcgccaaaccgttgcttcaggacgagcaccttctcaagtcgaagccggcg
cggcggcgcgatcccacacagcctcatcttccgttcgacccgatgcccgatcgggtagag
ccatgcctggcgctgctgaagaaggtgccgcccaaaggaccggattgggcattcgaggtg
aaatgggacggctatcgacttgccattcacatcgagccgaaaggggtgcggatcatcacc
cgcggcggccacgattggacgcaccggtttccgacgatcgccgaggcggcgaggaagctc
ggcgtcggaaccgccatccttgatggcgaggcggtcgtactcgacaacgagggacattcg
gattttggcgccctgcagcgttcgctcggtggacggggtgggaaacgctcgtcgacggag
tccgtgttcatggcattcgaccttctctattttgacggccatgatctgacgggaacggaa
ctctcggtccgccgccacctgctggaagattttctcgatggcgtcaccggcgcaattcgg
ctgtcggacgaagtctttggcgatggcgccgagcttctggcgaatgcctgctcgatgggg
ctcgagggcatcatcgccaagcatcgggatcagccctatcgctccggccgcaccggcgac
tggctgaagatcaaatgtgtccagagcgaaagcttcatgatcatcggctacgagcagtcg
acagttgcgcgcggtgggatcggcagcctgcttcttgcagcgcgcaaggagcgtgactgg
gtctatgtcggctcggttggaaccgggtttaatgccagggatgcggcgtacctgcgcatg
tcactcgataagatcagaaccaagcggccggctgtagcactcaagggcaagaacctggtc
ttcgcccagccgacattgattgcggagatcgagtttcgcggatggaccgatgacggcagt
ttgcgccatgcatcctataagggcctccgtgaaatccaggacaatgcggcggttttcgac
atgaatgagaaaccgactgaatga
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