Rhizobium etli bv. phaseoli IE4803: IE4803_PC00640
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Entry
IE4803_PC00640 CDS
T03667
Name
(GenBank) ATP-dependent DNA ligase protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
rep
Rhizobium etli bv. phaseoli IE4803
Pathway
rep03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
rep00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
IE4803_PC00640
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rep03400
]
IE4803_PC00640
Enzymes [BR:
rep01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
IE4803_PC00640
DNA repair and recombination proteins [BR:
rep03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
IE4803_PC00640
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
Motif
Other DBs
NCBI-ProteinID:
AJC83185
LinkDB
All DBs
Position
pRetIE4803c:complement(689639..692275)
Genome browser
AA seq
878 aa
AA seq
DB search
MADNLSKYRAKRDFKKTREPSGEAGVKPSNRRRFVIQKHDATRLHYDLRLELDGVFKSWA
VTKGPSLDPHDKRLAVEVEDHPLDYGDFEGTIPKGQYGGGTVMLWDRGYWEPEGRKSPEE
ALRKGDFKFTLEGKRLHGSFVLVRMRHDRDGGKRTNWLLIKHHDEHSVEENGAAILEENA
TSVASGRSMDEIAEGKGRKPRPFMMAKADVEADAVWDSKHGLAADERKKKPREDVATSTA
ADLPDFIEPQLCDRLDRPPAGDDWLHEIKFDGYRIQMRVADGEVTLKTRKGLDWTSKYSG
IAEAASGLPDCIIDGEICALDENGAPNFAALQAALSEGKTGNLVYFAFDLLFDGGEDLRS
MRLFERKERLQNLLTAAGDDPRIRYVEHFQSGGDAVLRSACKLHLEGVISKQMDAPYQSG
RTDTWAKSKCRAGHEVVIGGYAKTNGRFRSLLVGVHRGDHFVYVGRVGTGYGAKKVEMLL
PKLKALETTKSPFGGIGAPKKQAEVVWLKPELVAEIEFEGWTTDGLVRQAAFKGLREDKA
AKEVEAEKPAPPAQTETAGPAAAAKHKSARRKGAKAEVMGVLISNPDKPLWPDAGDGEPV
TKEDLARYHETVGAWLIEHIKGRPCSIIRAPDGIGGEQFFQRHAMPGTSNLLELVKVFGD
KKPYLQIDRIEGLAAIAQIGGVELHPWNCQPGKPEVPGRLVFDLDPGPDVPFATVVAAAR
QMRDRLDELGLVSFCKTTGGKGLHVVTPLTANKRKALSWAEAKGFAHDVCQQMARDNPDL
YLIKMTKSLRGGRIFLDYLRNDRMATAVAPLSPRARAGATVSMPLTWAQVKSDLDPKRFT
LRTVPALLTKSSAWQDYCDSERPLEQAIKRLGKSRHAA
NT seq
2637 nt
NT seq
+upstream
nt +downstream
nt
atggccgacaacctctcgaaatacagggccaagcgcgatttcaagaagacccgcgaaccg
agcggggaagcgggcgtcaaaccgtcgaaccgccggcggttcgtgatccagaagcacgac
gccacacggcttcactatgacctcaggctcgagctcgacggcgtgttcaagtcctgggcg
gtgaccaagggaccctcgctcgatccgcatgacaagcgcctcgctgtcgaggtcgaggat
cacccgctcgactacggcgacttcgaaggcacgatcccgaagggccaatatggcggcggc
acggtgatgttgtgggaccgcggttattgggagccggaaggccgcaagtctccggaagag
gctttgagaaaaggcgacttcaagttcacgctcgagggcaagcgactgcacggcagcttc
gtcctggttcggatgcgtcatgaccgcgatggcgggaagcgcacgaattggctgctgatc
aaacatcacgacgaacattcagtcgaggaaaacggtgcggcgatcctggaggagaatgcg
acctccgtcgcctccggccgcagcatggatgagatcgccgaaggcaagggccgcaagccg
cgaccgttcatgatggcgaaggcggatgtcgaggcggacgccgtgtgggacagcaagcat
ggtcttgccgccgacgagcgcaagaagaagcctcgcgaggatgtcgcgacctccacggcg
gccgatctgccagatttcatcgagccgcagctttgcgacaggctcgatcggccacccgcc
ggcgatgattggctgcacgaaatcaagttcgacggctatcggatccagatgcgggtcgcc
gatggagaggtgacgctgaagacgcgcaagggcctcgattggacgtccaaatattctggg
attgcggaagccgcgtccggactgcccgactgcatcatcgatggcgagatctgcgcgctc
gatgagaatggcgcaccgaatttcgccgcacttcaggcggctctgtcggaaggcaagacc
ggtaacctcgtctatttcgccttcgacctgctcttcgatggcggagaggacttgcggtcg
atgcgcctgttcgagcgcaaggagcggctgcaaaaccttctcacagctgccggcgacgat
cctcgcatccgctacgtcgaacatttccaatccggtggcgacgcggtgctgcgctccgcc
tgcaagctgcacctcgaaggagtcatctccaagcagatggacgcaccctatcagtccggc
cgcaccgacacctgggcaaagtcgaaatgtcgcgccggacacgaggtggtgatcggcggt
tatgccaagaccaacggcaggttcagatctctcctggtcggcgttcaccgcggcgatcac
tttgtctatgtcggccgtgtcggaaccggctacggcgcgaagaaagtcgaaatgctgctg
ccgaaactgaaggcgctcgagacgacgaaatcgcctttcggcggtatcggtgctccgaag
aagcaggccgaagtggtctggttgaagccggagcttgtcgccgaaatcgaatttgaaggg
tggaccacggacggcctcgtccgccaggctgccttcaagggcctgcgcgaggacaaggcg
gcgaaagaggtcgaggccgaaaagccggcgccgcctgcccagactgaaaccgcgggaccg
gccgcggctgccaaacataagtctgcccgccgcaaaggcgcgaaggccgaggtcatgggt
gttctcatttccaatcccgacaagccgctgtggccggacgccggtgatggtgagcccgtc
acaaaggaggaccttgcgcgctatcatgagaccgtcggtgcttggcttatcgagcatatc
aagggccgaccatgctcgatcattcgagcacccgacggcattggcggcgagcagttcttt
cagcgtcacgcgatgcccggcacttcgaacctgctcgaattggtgaaggttttcggggac
aagaagccttacttgcagatcgatcgtatcgaggggctggcggcgatcgcccagatcggc
ggcgttgaactgcatccgtggaactgccagcccggcaagccggaagtacccggccgtctg
gtgttcgacctcgaccctggtcctgacgtgccgtttgcgacggtggtcgcagccgcccgc
cagatgcgcgaccgtctcgatgaactcggcctcgtcagcttctgcaagactaccggtggc
aagggcttgcatgtcgtgaccccgctgaccgccaacaaacgcaaagccttgtcatgggcc
gaagccaagggctttgcccatgacgtttgccagcagatggcgcgcgacaatcctgacctg
tacttgatcaagatgaccaagagtctccgtggcggcaggatcttcctcgattacctccgc
aacgatcgcatggcgacggccgttgcgccgctctccccgcgcgcccgcgccggcgccacc
gtgtccatgccgcttacctgggcgcaggtgaagtccgatctcgacccgaagcgttttacg
cttcgaacggtgccggcgcttctgaccaaaagctccgcctggcaagactattgcgacagc
gagcggccgctggaacaggcgatcaagcgtctcggaaaatcccgacacgcagcgtga
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