Prescottella equi: REQ_10780
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Entry
REQ_10780 CDS
T01352
Name
(GenBank) putative ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
req
Prescottella equi
Pathway
req03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
req00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
REQ_10780
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
req03400
]
REQ_10780
Enzymes [BR:
req01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
REQ_10780
DNA repair and recombination proteins [BR:
req03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
REQ_10780
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
DNA_ligase_OB_2
Motif
Other DBs
NCBI-ProteinID:
CBH47178
UniProt:
A0A3S5Y3R3
LinkDB
All DBs
Position
1130562..1132802
Genome browser
AA seq
746 aa
AA seq
DB search
MPTRTIDGRRVAVSRLDKVLYPATANGPAVTKGEVIDYYEAIAPAMLPHVVDRPVTRKRW
PNGVDEPSFFEKNLAASAPDWLTRHAVHHKDRAVRYPVIDSAAALVWIGQQAALEVHVPQ
WRFVDGEPGPATRLVFDLDPGDGVGLAECARVAAAVRDLVASLGWTAYPVTSGSKGIHVY
VPLDRTLAPGGASTVARKVATSLEQLHPDLVTATMAKSVRAGRVFVDWSQNNAAKTTIAP
YSLRGRAAPTVAAPRTWDELEDPGLRHLRFDEVLDRFRRDGDLIADLDPRMDALTEYRRK
RDADRTPEPIPQTAAEGGEGNSFVIQEHHARRLHYDFRLERDGVMVSWAVPRGLPTSSKE
NRLAVHTEDHPLEYASFAGSIPKGEYGGGTVSIWDAGTYEPEKWRDDEVIVRLSGQRAQG
RYALIRTEGDQWLMHLMKDDGGATDLPRGLAPMLATAGTLDGLEPEQWAFEGKWDGIRLI
VEFDGTTVRLRGRAGNDVTERYPALQALAAALDGHRVVLDGEVVSLDSHGNTSFPALQAG
GVPQFRAFDILYLDGVSLLRKRYDDRRRILDALAAATVGLDVPPQLTGSVADVRAQSKDL
EGVVAKRRDSIYLPGRRGTAWIKTKNWLTQEVVIGGWRRGRGAREAGIGSLLLGVPDKAG
LRYVGRVGTGFSERERERLIELLGPLERESSPFAGEVPDVDRDTVWVTPSVVGEVRYRER
TDAGRLRHPAWRGLRDDKSPDDVRIE
NT seq
2241 nt
NT seq
+upstream
nt +downstream
nt
atgccgacgcgcaccatcgacggacgacgggtggcggtgagccgcctcgacaaggtgctc
tatccggccaccgcgaacggccccgcagtgaccaagggcgaggtgatcgactactacgag
gccatcgcaccggcgatgctgccgcacgtcgtggatcgtccggtgacccgcaagcgctgg
ccgaacggggtcgacgagccgtcgttcttcgagaagaacctcgctgcgtccgcaccggac
tggctcacccgtcacgcggtccatcacaaggaccgggcggtgcggtacccggtgatcgat
tccgctgcggccctggtgtggatcggccagcaggcggcgctcgaggtccacgttccgcag
tggcgcttcgtcgacggcgagccggggcctgcgacgcggctggtgttcgatctcgatccc
ggtgacggtgtggggctcgcggagtgcgcgcgggtcgccgccgcggtgcgggacctggtg
gcgagcctgggctggacggcgtacccggtcaccagtggcagcaaagggattcacgtgtac
gtgccgttggaccggacccttgcgccgggcggggcctccactgtcgcgcggaaggtcgcg
accagcttggaacagttgcaccccgatttggtgacggcgacgatggcgaaatcggtgcgg
gcgggccgcgtcttcgtggactggagccagaacaacgcggcgaagaccaccattgcgccg
tactcgttgcgcggccgggcggcacccaccgtggcggcgccgcggacctgggacgaactc
gaggatcccggcctgcggcatctgcggttcgacgaggtcctcgaccggttccggcgggac
ggcgacctcatcgccgacctcgatccgcggatggatgccctcaccgagtaccgccgcaag
cgcgacgccgaccgtacgcccgaaccgatcccgcagaccgcggccgaaggcggcgagggc
aattcgttcgtgatccaggagcaccacgcccgacgcctgcactacgacttccgtctcgaa
cgtgacggagtgatggtgtcgtgggcggtaccccgcgggctgccgacgtcgtcgaaggag
aaccgtctggccgttcacaccgaggaccacccgctcgagtacgcaagcttcgcgggatcg
attcccaagggcgagtacggcggcggcaccgtgagcatctgggacgcggggacgtacgag
ccggagaaatggcgcgacgacgaggtgatcgtgcgactgtccgggcagcgggcccagggg
cgatacgcgctcatccgcaccgagggcgaccagtggctgatgcacttgatgaaggatgac
ggtggtgcaaccgatctgccccgcgggctcgccccgatgctcgccaccgccggcacgctc
gacgggctcgaacccgagcagtgggcgttcgagggaaagtgggacggcatccgactgatc
gtcgaattcgacggcacgacggtgcggttgcgagggcgggcgggaaacgatgtgaccgaa
cgctatccggcgttgcaggcgctcgcggcggctctcgacgggcatcgagtggtgctcgac
ggcgaggtggtgagcctggactcgcacggcaacaccagttttcccgcgctgcaggccggc
ggcgtcccccagttccgggccttcgacatcctgtacctcgacggggtctcgctgctccgc
aagcgctacgacgaccgccgacggatcctcgacgcgctggccgcggccacggtgggcctc
gacgtgccgccgcagttgacgggcagcgtcgcggacgtgcgcgcgcagagcaaggacctc
gagggcgtcgtcgcgaagcgtcgcgactcgatctacctgccgggtcgccgcgggacggcg
tggatcaagacgaagaactggctcacgcaggaagtggtgatcgggggatggcggcggggc
cgcggtgcccgcgaggcaggcatcgggtcgctactgctgggtgttcccgacaaggccggg
ctgcggtacgtcggacgggtcgggaccgggttcagcgaacgggagcgcgaacggctgatc
gagttgctcggacccctcgaacgcgaatcgagccccttcgccggcgaggtacccgacgtc
gaccgggataccgtgtgggtgacgccgagcgtcgtcggtgaggtgcggtaccgggaacgc
accgacgccgggcgcctgcggcacccggcgtggcgcgggctgcgggacgacaagtctccc
gacgacgttcgcatcgaatag
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