Prescottella equi: REQ_12560
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Entry
REQ_12560 CDS
T01352
Symbol
mfd
Name
(GenBank) transcription repair coupling factor Mfd
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
req
Prescottella equi
Pathway
req03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
req00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
REQ_12560 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
req03400
]
REQ_12560 (mfd)
Enzymes [BR:
req01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
REQ_12560 (mfd)
DNA repair and recombination proteins [BR:
req03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
REQ_12560 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
DUF3638
AAA_22
UB2H
CbiX
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
CBH47353
UniProt:
A0A3S5Y4A0
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All DBs
Position
1310396..1314082
Genome browser
AA seq
1228 aa
AA seq
DB search
MSSVSTSDNSSAPVAAATPLAGLASTALADGAIGRVQDSVGRTGVDIVAPVAARPFVAAA
LADRTQLLLVTATGREADDLTTELQEIFGDGVAQFPSWETLPHERLSPSADTVGRRLQVL
RRLACPDEADYGPPLRVIVTTVRSLVQPMAPGLGDIEPVVLRIGSEHDFGELVSRLAELA
YTRVDMVGKRGEFAVRGGILDVFPPTSDHPVRVEFWGDEVTELRAFSVADQRSLPELELS
TVVAPPCRELLLTEAVRDRAAQLATENPADAALVEMLDKLSAGIPVEGMEALLPLLQPGE
LQLLTEVLPRETHVLLCDPEKIRTRATDLVRTGQEFLEASWTAASIGGAAPIDTSVLGGG
IDLGASAYRSLRQVRENAEAQGRPWWTISPLASGSEDELVLPVQSAPEVRGSEELLSMLF
VNLRAHVTTGGRAVVVVAGSGTAHRVLERLKEADVPAGELAPGAEPARGLVQVLRGSLHE
GIVLPGDDAAGVPGLVIVTESDLTGNRVAAAGDGKKMPAKRRNQVDPLALTAGDMVVHDQ
HGIGRFVEMVERTIGGARREYLVIEYAASKRGHPGDRLFVPMESLDQLSRYVGGEMPALS
KLGGSDWQNTKRKARKAVREIAGELVQLYAARQAAPGHAFGPDTPWQKEMEDAFAFTETH
DQLTVIDEVKADMEKPVPMDRVVIGDVGYGKTEVAVRAAFKAVQDGKQVAVLVPTTLLAQ
QHLQTFSERMANFPVKVRGLSRFTDAAESKEIIAQLADGEVDIVVGTHRLLQTGVRWKDL
GLVIVDEEQRFGVEHKEHIKALRTHVDVLTMSATPIPRTLEMSMAGIREMSTILTPPEER
HPILTYVGAYADKQVAAAIRRELLRDGQVFYVHNRVSSIDKAAKRIREMVPEARVVVAHG
QMNEETLEKTVQGFWEREFDVLVCTTIIETGLDISNANTLIVERADSLGLSQLHQLRGRV
GRSRERGYAYFLYPPEKPLTETAYDRLATISQNSDLGAGMAVAMKDLEIRGAGNVLGAEQ
SGHVAGVGFDLYVRLVGEAVEAYRAVADGRPVTTEPEVKEVRIDLPVDAHIPPDYVTSDR
LRLEGYRKLAAAADTDAIAAVVEELVDRYGPLPEEVGRLVSVAKLRLLCREYGIEEVSVT
GTQLKISPMQLPDSKQLRLKRMYPSAQYRATTGMVQMPLPRAGSGGVGAERVRDVELLQY
IANFLLAMDGKAADSVDLGTATGVQAGV
NT seq
3687 nt
NT seq
+upstream
nt +downstream
nt
ttgtcttccgtgtccacttcagataactcttcggcccctgtcgccgcggccacgccactc
gcgggtctcgcgtcgacggcgctcgcggacggtgcgatcggccgggtgcaggacagcgtc
ggacgtaccggtgtcgacatcgtcgccccggtcgcggcgcgcccgttcgtcgccgccgcg
ctcgccgaccgcacccagttgttgctggtgaccgctaccggacgtgaggccgacgacctc
accaccgagttgcaggagatcttcggagacggcgtcgcgcagttcccgtcgtgggagacg
ctgccgcacgagcggctctcgccgagcgcggacaccgtcggtcgccgcctgcaggtgctg
cggcgtctcgcgtgtcccgacgaggccgactacggcccgccgctgcgggtgatcgtcacg
accgtgcgctcgctggtgcagccgatggcgcccgggctcggcgatatcgagccggtcgtc
ctgcggatcggatccgaacacgacttcggcgaactggtctcgcgtctcgcggaactcgca
tacacccgcgtcgacatggtcggcaagcgcggcgagttcgcggtgcgcggcggcatcctc
gacgtcttcccgcccacgtcggatcatccggtgcgcgtcgagttctggggcgacgaggtc
accgaactgcgggcgttctcggtcgcggaccagcgttcgctgccggaactcgagctcagc
acggtggtcgcgccgccgtgccgtgaactgctgctgacggaagcggtgcgcgaccgcgcc
gcgcagctggccaccgagaaccccgccgacgcggctttggtcgagatgctcgacaaactc
tcggccggtatcccggtcgagggcatggaggcattgctgccgctactgcagcccggcgag
ctgcagctgctcaccgaggtgctgccgcgcgagacccatgtgctgctgtgtgatccggag
aagatccggacccgcgccaccgatctcgtgcgcaccgggcaggagtttctcgaggcgtcg
tggacggcggcatcgatcggcggggccgcgcccatcgacacgtcggtgctcggcggcggc
atcgacctgggagcgtccgcgtaccggtcgctgcgtcaggtgcgggagaacgccgaggcg
cagggccgtccgtggtggaccatcagtccgctggcgtcgggcagcgaggacgagctcgtc
cttccggtgcagtcggcgcccgaggtgcgcgggtccgaagagctgctgtcgatgctgttc
gtgaacctgcgggcgcacgtgaccaccgggggacgcgcggtggtggtcgtcgccggttcg
ggcacggcccaccgcgtgctcgagcgactcaaggaggccgacgtcccggccggcgagctc
gcgccgggcgccgagccggcccgcggactcgtccaggtcctgcgtgggtcgctgcacgaa
ggcatcgtgctgccgggtgacgacgcggccggggtccccggattggtgatcgtcaccgag
tccgacctgaccggcaatcgggtggccgccgccggtgacggcaagaagatgccggccaaa
cggcgcaaccaggtcgatccgctcgcgctcaccgccggcgacatggtggtgcacgaccag
cacggcatcggccgcttcgtcgagatggtcgagcgcaccatcggcggggcccgccgcgag
tacctcgtcatcgagtacgccgccagcaagcgcggccatccgggagaccggctgttcgtg
ccgatggagtcgctcgatcagctctcccgttacgtcggcggcgagatgcccgcgctgtcg
aagctgggcggctcggactggcagaacacgaaacgtaaggcgcgcaaggctgtccgggag
atcgccggcgagctggtgcagctgtacgcggcccgccaggcggcgccgggtcacgcgttc
ggtccggacaccccgtggcagaaggagatggaggacgcgttcgcattcaccgagacccac
gaccagttgaccgtcatcgacgaggtgaaggccgacatggagaagccggtcccgatggat
cgcgtcgtgatcggtgacgtcggctacggcaagacggaggtcgcggtccgtgccgccttc
aaggccgtgcaggacggcaagcaggtcgcggtgctggtgccgacgacgctgctcgcacag
cagcacctgcagacgttctccgagcggatggcgaactttccggtgaaggtgcggggcctg
tcccggttcaccgatgccgccgagtccaaggagatcatcgcgcagctggccgacggcgag
gtcgacatcgtggtcggtacccaccgactgctgcagaccggtgtccgttggaaggacctc
ggtctcgtgatcgtcgacgaggagcagcggttcggcgtggagcacaaggagcacatcaag
gcgctgcgcacgcacgtcgacgtgctcaccatgtcggccaccccgatcccgcgaacgctc
gagatgagcatggccggcatccgggagatgtcgacgatcctcacgccgcccgaggaacgg
cacccgatcctcacgtacgtcggtgcgtacgcggacaagcaggtggccgcggccatccgg
cgcgagttgctgcgcgacggtcaggtgttctacgtccacaaccgggtcagctcgatcgac
aaggccgccaagcggatccgcgagatggttcccgaggctcgggtcgtcgtcgcgcacggg
cagatgaacgaggagaccctcgagaagaccgtgcaggggttctgggagcgcgagttcgac
gtcctggtctgcaccacgatcatcgagaccggcctcgacatctcgaatgccaacacgctc
atcgtggaacgggccgattcgctgggcctgtcgcagctgcaccagttgcgcggccgcgtc
ggccgtagtcgtgagcgcggttacgcgtacttcctgtacccgccggagaagccgctcacc
gagacggcgtacgaccggctcgccacgatctcgcagaactccgacctcggcgccggcatg
gccgtcgcgatgaaggatctcgagatccgcggcgccggaaacgtgttgggtgccgagcag
tcggggcacgtcgcgggtgtcggcttcgacctgtacgtgcggctggtcggcgaggccgtg
gaggcgtatcgcgcagtcgccgacggccggcccgtcaccaccgagcctgaggtcaaggag
gtgcgcatcgatcttccggtcgacgcgcacatcccgcccgactacgtcaccagcgatcgg
ctccggctcgagggctatcgcaagctcgctgccgcagccgacaccgatgcgatcgccgcg
gtcgtcgaggaactcgtcgaccgctacggtccgctccccgaggaagtgggtcggctggtg
tcggtcgcgaagctccgattgttgtgccgcgagtacggcatcgaggaagtgtccgtcacc
ggcacccagctcaagatctcgcccatgcaacttccggactcgaaacagctgcggctcaag
cgcatgtacccgagcgcgcagtaccgggcgactaccgggatggtgcagatgccgctgccg
cgtgccggttcgggcggcgtcggagccgaacgggtgcgcgacgtcgaactactgcagtac
atcgcgaacttcctcctcgcgatggacgggaaggcggcggactccgtggatctcggtacc
gccaccggcgtgcaggccggggtctga
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