Rhodococcus erythropolis PR4: RER_43010
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Entry
RER_43010 CDS
T00881
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
rer
Rhodococcus erythropolis PR4
Pathway
rer03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rer00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
RER_43010 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rer03400
]
RER_43010 (mfd)
Enzymes [BR:
rer01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RER_43010 (mfd)
DNA repair and recombination proteins [BR:
rer03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
RER_43010 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
IstB_IS21
DUF3638
AAA_22
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
BAH35009
NITE:
RER_43010
UniProt:
C1A324
LinkDB
All DBs
Position
complement(4725214..4728903)
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AA seq
1229 aa
AA seq
DB search
MEILRSGCASATRHHCSGARSLTSLSSAQTALAGLAEVALADAAFTPVIDSIGAPALDIV
APKPARPFIAAALAARTPVLLVTATGREADDLTSELTEMLGGGVAQFPSWETLPHERLSP
SADTVGRRVEVLRRLARPDDASYGSPLRVIVTTVRSLVQPMAPGLGEIEPITLRVGTEID
FDSVLVRLVEMAYSRVDMVGKRGEFAVRGGILDLFSPTADHPVRIEFWGDEVSELRYFSV
ADQRSLPDVDVDSVIAPPCRELILTADVRDRAAALAAENQADASLVEMLDKISAGIPVEG
MEALLPVLKPGELQLLSDVLPVGAHILLCDPEKVRTRATDLVRTGQEFLEASWTAASIGG
AAPLDTSILNGGGVDLGASAYRSLRHVRESAEAAGRPWWTVSPLASGNGEELEIPVQAAP
QVRGSDDLLAELFVSLRAHVSTGGRAAIVVAGAGTASRVVERLGEAEVPAKMLEGGATPA
RGQVAVLRGSLHDGLVLAGDDSTPGMVIVTESDLTGNRVAAVGDGKRLPAKRRNQVDPLA
LSAGDMVVHDQHGIGRFVEMVERTIGGARREYLVIEYAPSKRGHPGDRLFVPMESLDQLS
RYVGGELPALSKLGGSDWANTKRKARKAVREIAGELVQLYAARQAAPGHAFGPDTPWQKE
LEDAFAFTETIDQLTVISEVKADMEKPVPMDRVVIGDVGYGKTEIAVRAAFKAVQDGKQV
AVLVPTTLLAQQHLQTFTERMASFPVKVRGLSRFTDAKDSKEIIAGMAEGEIDIVVGTHR
LLQTGIRWKDLGLVIVDEEQRFGVEHKEHIKALRTHVDVLTMSATPIPRTLEMSMAGIRE
MSTILTPPEERHPILTYVGAYADKQVAAAIRRELLRDGQVFYVHNRVSSIDKAAKKIREL
VPEARVVVAHGQMNEDTLEKTVQGFWERDFDVLVCTTIIETGLDISNANTLIVERADSLG
LSQLHQLRGRVGRSRERGYAYFLYPAEKPLTETAYDRLATISQNSDLGAGMAVAMKDLEI
RGAGNVLGAEQSGHVAGVGFDLYVRLVGEAVEAFRAAADGKPITMDEGTKEVRIDLPVDA
HIPPDYVTSDRLRLEGYRKLAAATDSDGIAAVVEELVDRYGPLPEEVRRLISVAKLRLLC
REYQLEEVAVTGTQLKISPMSLPDSKQIRLKRIYPSAQYRATTGLVQLPLPRTGGVGSDR
LRDVELLQYIADFILAIDGRAAGAVLVEA
NT seq
3690 nt
NT seq
+upstream
nt +downstream
nt
gtggagatcttgcgctcgggctgtgcgtccgcaacccgtcatcactgttcaggagcgcgt
tcgttgacttccttgtcctctgcccagactgcgctcgctggactcgccgaggtcgccctc
gcagacgccgcgttcactccagtgatcgactcgatcggtgcgcctgccctggacatcgtg
gcgccgaagccggctcgaccattcatcgccgctgcacttgccgcgcgcactccggtgctg
ctggtgacggccaccggtcgcgaagccgacgatctgacgtcagaactcaccgagatgctc
ggtggaggcgtcgcgcagttcccgtcgtgggaaacattgccgcacgagcgactgtcgccg
agcgcggacaccgtcgggcgacgggtggaggtactgcgccgactcgccagaccagacgac
gcctcgtacggctcgcctctccgggtgatcgtgaccacggtgcgctctctcgttcagccg
atggcgccgggtcttggcgagatcgagccgatcacgttgcgcgtcggcaccgagatcgat
ttcgattctgttctggttcgcctggtggagatggcgtacagccgtgtcgacatggtggga
aagcgtggtgagttcgcggtccgcggcggcattctcgacctgttctcgccgacggcggat
catccggtacgtatcgaattctggggtgacgaggtatcggagcttcggtacttctctgtc
gccgatcagcgttcgctaccggacgtcgacgtcgattccgtgatcgcgccgccgtgtcgt
gagctgattctgacagctgatgttcgcgatcgagctgcggcactcgctgctgagaatcag
gctgacgcgtcgttggtcgagatgctggacaagatctcggcaggcatccccgtcgagggg
atggaagctctgctcccggttctcaaacccggtgaactgcaactactttccgatgtcctt
ccggtaggggcgcacatccttctgtgcgatccggagaaggtgcgcacccgcgccaccgat
ctggtgcgcaccggccaggaattcttggaagcgtcgtggacggcggcgtcgatcggcggc
gctgcaccgctcgacacgtcgatcctcaacggcgggggagtcgatctcggtgcctccgca
taccggtcgcttcgtcatgttcgcgaatctgccgaagctgccggccgtccgtggtggacg
gtcagcccgctggcttcgggaaatggtgaagaactggaaatcccggttcaggcggcaccg
caggtacgtggttccgacgacctcttggccgagctgttcgtcagcctccgggcacacgtg
agcacgggcggtcgcgcggcgatcgtggtggcaggcgccggcacagcaagccgagtcgtc
gagcgactcggtgaagccgaagtacccgccaagatgctcgaaggcggagcgacccctgcc
cgcggacaggtcgcggtgctccgcgggtctctgcacgacggactggtactcgccggcgac
gactcgacgccggggatggtgatcgtcaccgagtccgatctgacgggcaaccgcgttgct
gcggtcggcgacggaaagcgcttgccggccaagcgccgcaatcaggtcgatcccctcgcg
ctgtctgcaggggacatggtcgtgcacgatcagcacggtatcggccggttcgtcgagatg
gtcgaacgcaccatcggcggggcgcgtcgtgaatacctggtcatcgagtacgcgccgagc
aagcgtggtcacccgggtgatcgtctgttcgtcccgatggaatcgctcgatcaactctcc
cggtacgtcggtggagagttgcctgcgctgagcaagctcggtggatccgactgggcgaac
accaagcgtaaggcccgcaaggcggttcgtgagatcgcgggtgagttggttcagctctac
gctgcgcgtcaggcggccccggggcatgcgttcggcccggacacgccgtggcagaaggaa
ctcgaagacgcattcgccttcaccgagaccatcgaccagttgaccgtcatcagtgaggtc
aaggccgacatggagaagccggttccgatggaccgggtggtgatcggtgacgtcgggtac
ggcaagacggagatcgccgttcgtgccgcgttcaaggcagtccaggacggcaagcaggtg
gcggtactggtcccgacgactctgcttgcacagcaacatcttcagacattcaccgaacga
atggcgtcgttcccggtgaaggtgcgagggctgtcccgtttcaccgacgccaaggactcg
aaggaaatcatcgccggcatggccgaaggcgagatcgacatcgtcgtcggtactcaccgg
ttgctgcagaccggtattcgctggaaggacctcgggcttgtgatcgtcgacgaggaacag
cgattcggagtcgagcacaaggaacacatcaaggcactacgcacccacgtcgacgtcttg
acgatgtcggctaccccgattcctcgtactctcgagatgagcatggccgggatccgcgag
atgtccacgatcctcacaccgccggaagaacgtcatccgatcctcacttacgtcggcgcg
tatgcggacaagcaggttgccgcggccatccggcgtgaacttctgcgcgacggtcaggtc
ttctacgtacacaaccgtgtcagctcgatcgacaaggcggccaagaagatccgtgaactc
gtcccggaggctcgcgtcgtcgtcgcgcacggtcagatgaacgaggacactctcgaaaag
accgtgcagggcttctgggaacgcgacttcgacgtgttggtctgtaccacgatcatcgaa
accggtctggacatctcgaacgcgaacacactgatcgtcgaacgtgcggactcgcttggc
ctctcgcagttgcatcagcttcgcggacgcgtcgggcgtagtcgtgaacgtggatacgca
tacttcttgtacccggccgaaaagccgttgacggaaacggcatacgatcgactggcaacg
atttcgcagaattcggacctcggcgctggtatggcagtcgcgatgaaggacctcgaaatc
cgtggagccggaaacgttctgggcgcagagcagtccggccacgtcgcaggggtcgggttc
gatctgtatgtcaggctggtcggtgaggcggtcgaagccttccgggctgcagccgacggc
aaaccgatcaccatggacgagggcacgaaggaagtccggatcgacctaccggtggacgcg
cacatcccgcccgactacgtcaccagtgacaggctcaggttggaggggtaccgcaagctc
gctgcggcaactgattccgacggcatcgctgccgtagtcgaagaactggtcgatcgctac
ggcccactgcccgaagaggttcgacggctgatctcggtggccaagcttcgactgctctgc
cgcgagtaccaactggaggaagtcgccgtcaccggaactcagctcaagatctcgccgatg
tcactgcccgattccaaacagatcaggctcaagaggatctatccgagcgcgcagtaccgg
gcaacgaccgggctcgtgcaactcccgctgcctcgcaccggcggagtcggctcggatcgc
ctgcgggacgtcgaactacttcaatacatcgcggacttcatcctggcgatagacgggcgc
gccgccggtgccgtcctggtcgaggcgtga
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