Cupriavidus pinatubonensis JMP134: Reut_B4424
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Entry
Reut_B4424 CDS
T00268
Name
(GenBank) ATP-dependent DNA ligase LigD polymerase module / ATP-dependent DNA ligase LigD phosphoesterase module
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
reu
Cupriavidus pinatubonensis JMP134
Pathway
reu03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
reu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Reut_B4424
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
reu03400
]
Reut_B4424
Enzymes [BR:
reu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Reut_B4424
DNA repair and recombination proteins [BR:
reu03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Reut_B4424
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AAZ63775
UniProt:
Q46SV9
LinkDB
All DBs
Position
2:complement(1082413..1085205)
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AA seq
930 aa
AA seq
DB search
MRWPAWSPASPLPRPALHARSGRWQHVPPADQNIGLQGNRRGSQKLDGCAPTQNHITKCA
EKQERSRAMALMRHLPSGEREPGPRVGDGPILHLRDKQACAYAVFMARTSLDRYREKRDF
RVTAEPGPRTRAPRAPGPLRFVVQKHWARRLHYDFRLELDGVLLSWAVPKGPSFDPAEKR
IAIHVEDHPVDYAAFEGTIPPKQYGAGSVIVWDNGTWEPVGDAQAGMAKGKLEFALHGQK
LAGRWELVRISKPGDADDQWMLFKKRDRWARPHAEFDVITALPDSVVAHPLGQVEERESS
SASPSGTPDLSAAVRAPPPPRLAPQLATPTAKLPSGSGWIIETKFDGYRLLSRIVDARVH
LITRNGHDWTRKLGGLAKEVEKLDISEGWLDGEIVVLRDGLPDFNALQNAIDSHRTESIV
YFLFDIPYWEGRDLRRVPLRERRAHLARLVDARSERVRFSESFEAPADQVFQAASQLGLE
GVMLKRADSAYSSSRNADWLKAKCRLRQEFVICGYGDREGAPGEVGRLMLGVYEDGQLRD
AGNVGTGWDSKTAAALRTQLAKLKTDTAPFAAASKGRSRWGSNRNSTPHWVKPSLVAEVE
FAEWTPAGQVRQASFKALRSETPARDVRREAVQVEPGSTRAAVKVTHPERVIDATTGITK
LDLVRYYESVADWLLPHLMARPVALLRAPDGIGGELFFQKHAETTKLPGLTEQPASLWPG
HSRLLTIDSAEALAGAAQLNVVELHTWNSTAADLAHPDRVIFDLDPGEGVSWQHVQEAAI
LVHTLLGELGLAAWLKTSGGKGLHVVVPLVPELDYDAVKSFSRAAVLHLAKTLPQRFVAR
SGAGNRKGRVFVDYLRNGTGQTTAAAFSARARPGMGVSMPLSWEQLPQLKSADQWTVRNA
REYLSFRTNDPWSDYWSTTQSLQDAMEALG
NT seq
2793 nt
NT seq
+upstream
nt +downstream
nt
atgcgctggcctgcatggtcacctgcctcgccgctgccccggccagcattgcatgcacgc
tctggccgatggcaacacgttcctccagccgatcagaacatcgggcttcagggcaatcgc
cggggaagccaaaaacttgatggctgcgctcctacacagaaccatattacaaagtgcgct
gaaaaacaggagcggagccgggccatggctctgatgcgacacctcccaagcggcgagcgg
gaaccgggtccacgtgttggggatggcccgatccttcatctacgagacaagcaagcgtgc
gcctatgctgttttcatggcacgaacttcccttgaccgataccgcgaaaaacgtgatttc
cgcgtcacggccgaaccgggcccgcgcacccgtgccccccgcgccccggggccgctgcgc
tttgtcgtgcagaaacactgggcgcgacgcctgcattacgacttccggctcgaactcgat
ggcgtgttgctcagctgggccgttcccaagggacccagcttcgatccggccgagaagcgc
atcgccatccacgtggaagaccatcccgtcgattacgcggcgttcgaaggcaccatcccg
ccgaagcagtatggggcggggtccgtcattgtgtgggacaacggcacgtgggagccggtg
ggcgacgcgcaggccggcatggcgaaaggcaagctcgaattcgctttgcacgggcagaag
ctcgccggccgctgggaactggtgcgtatctcgaagccgggcgatgccgatgaccagtgg
atgttgttcaagaagcgggaccggtgggcgcggccgcatgcggagttcgacgtcattacg
gcgttgccggacagcgtcgtcgcgcatccactcgggcaggtcgaggaacgcgagagcagc
agtgcatcgccgtctggtaccccggacttgtcggccgcggtacgggcaccgccgccgccg
cgcctggctccgcaactggcgacaccgaccgcaaaactgcccagtggtagcggctggatc
atcgagaccaagttcgacggatatcggctcctgtcccggatcgtcgatgccagggtgcac
ctgatcacgcgcaacggccacgactggacgcgcaagctcggcggtctcgccaaggaagtc
gagaagctggatatctcggaaggatggctcgacggtgagatcgtggtgctgcgcgacggc
ctgcccgacttcaatgcgctgcagaacgccatcgacagccaccgcaccgaatcgattgtc
tacttccttttcgacattccgtactgggaaggacgcgacctgcgccgcgtgccattgcgg
gaacgtcgggcgcatctggcgcgcctggtcgatgcccgctccgaacgcgtgcgcttcagc
gaaagtttcgaggcgccggcggatcaggtctttcaggccgcgtcccagttggggctggag
ggcgtgatgctgaaacgggcggactccgcctacagctcttcgcgcaatgccgactggctc
aaggccaaatgccggctgcgccaggagttcgtgatctgtggctatggagacagggaaggt
gcgcccggcgaagtcggccgcctgatgctcggcgtctatgaggacgggcaactgcgcgat
gccggcaacgtcggcacgggatgggacagcaagaccgccgccgcgttgcggacgcagctc
gcaaagctgaagaccgatacggcgccgtttgccgctgcctcgaagggccgcagcaggtgg
ggatcgaacaggaacagtacgccgcattgggtcaagccgtcgctggtggcggaggtcgag
ttcgccgagtggacgccggcgggccaggtacgccaggcatcgttcaaggcgctgcgcagc
gaaacgccggcgcgggatgtccgcagggaagcggtgcaggtcgagccgggttccacgcgc
gccgccgtgaaagtgacgcaccctgagcgagtcattgatgccaccaccggcatcaccaag
ctcgacctcgtgcgctactacgagagcgtggcagactggctgctgccgcatctcatggcg
cggcccgtggcgctgctgcgcgcgcccgatggcatcggcggcgagctcttctttcagaag
cacgctgaaaccacgaagctgccggggctgaccgagcagcctgcgtccctgtggccaggg
catagccgcctgctgacgatcgactcggccgaagcgctcgccggcgccgcgcaactgaat
gtggtcgaactccacacatggaactccacggcggccgatctcgcccacccggatcgcgtc
atcttcgatctggaccctggggagggcgtgtcctggcagcatgtacaggaggcagcgatc
ctggtgcacacgctactgggggagctggggcttgcagcgtggctcaagaccagcggcgga
aaagggctgcacgtcgtcgtgccattggtgccggaactcgactatgacgcggtaaagtcc
ttttcccgcgccgccgtgctgcacctggccaagaccctgcctcagcgcttcgtggccagg
tccggcgcaggcaatcgcaagggtagggtgtttgtcgactacttgcgcaacggcaccggg
cagaccaccgccgcagcattctcggcgcgtgcgcgacccggcatgggtgtgtcgatgcca
ctatcatgggagcaactgccgcagctcaaaagcgccgaccagtggacggtccggaacgcc
agggaatacctgagcttccggacgaatgatccatggagtgactactggtcgacgacgcaa
agccttcaagatgccatggaggcactcggctga
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