Rhodococcus fascians D188: A3L23_00507
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Entry
A3L23_00507 CDS
T04328
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
rfa
Rhodococcus fascians D188
Pathway
rfa03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rfa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
A3L23_00507 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rfa03400
]
A3L23_00507 (mfd)
Enzymes [BR:
rfa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
A3L23_00507 (mfd)
DNA repair and recombination proteins [BR:
rfa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
A3L23_00507 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
DUF3638
IstB_IS21
UB2H
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AMY51867
UniProt:
A0A161GJ32
LinkDB
All DBs
Position
complement(564865..568554)
Genome browser
AA seq
1229 aa
AA seq
DB search
MSSDSLPAMTTSGPAPIVPDAALHLSGLASVALTDASMVAVADAIGTAEHTLIGPHSVRP
FVAAAIAQRTQLLIVTATGREADDLTSELTQILGDGVAMFPSWETLPHERLSPSADTVGK
RLDVLRRLARPGDSDYGDPLRVIVTTVRSLVQPMAPGLGEIEPVTLKVGLDLDFDGLIHR
LVEFGYLRVDMVGKRGEFAVRGGILDLFSPTADHPVRVEFWGDEITELRAFAVSDQRSLP
DHEVDLVIAPPCRELLLTQEVRDRAAVLAADNAGDTALVEMLDKLSAGVPVEGMEALLPL
LQPGELQLLADTLPAGTHVLLCDPERIRTRATDLVRTGQEFLEASWTAASIGGAAPLDTS
TLDTSSLEGASLDLGASAYRSLRQVRESAQVHGRPWWTISPLASGNGEEVELAVDPVPEV
RGSEEALTALYATLRVHIATGGRAVISVAGAGTAKRIIERLAEAEVPAAHLDSGAVPVPD
VVNVLCGSLHDGLVFPDAKLVVVTESDLTGNRVAAAGEGRKLPAKRRNQVDPLALVAGDS
VVHDQHGIGRFVEMVERTIGGARREYLVVEYAPSKRGHPGDRLFVPMDSLDQLSRYVGGE
LPTLSKLGGSDWANTKRKARKAVREIAGELVQLYAARQAAPGHAFGADTPWQREMEDAFG
FTETVDQMTAITEVKADMEKAVPMDRVILGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPT
TLLAQQHLQTFTARMASFPVTVKGLSRFTHGADSKEVMAGLADGTVDIVVGTHRLLQTGV
AWKDLGLVIVDEEQRFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILT
PPEERHPVLTYVGAYNDKQVAAAIRRELLRDGQVFFVHNRVSSIDKAAKKIRDLVPEARV
ATAHGQMNEETLERTVQGFWQRETDVLVCTTIIETGLDISNANTLIVERSDSLGLSQLHQ
LRGRVGRSRERGYAYFLYPPEKPLTETAYDRLATISQNSDLGAGMAVAMKDLEIRGAGNV
LGAEQSGHVAGVGFDLYVRLVGEAVEAYRAAADGKPITTDEAPKEVRIDLPVDANIPPDY
VTSDRLRLEGYRKLAAAADSEGIDAVIDELVDRYGPLPEEVGRLVSIAKLRLIAKEYGLT
DVNVAGTQVKLAPMDLPDSKQIRLKRLYPSATYRATTGVVQLPLPRVEGGGVGAARVRDV
ELVQFIADLILSLDGKPSRSVLLEQTVGV
NT seq
3690 nt
NT seq
+upstream
nt +downstream
nt
ttgtcttccgattccctgcctgccatgaccacgtccgggccggccccgatcgttcccgac
gcggcgcttcacctttcggggctcgccagtgtcgcgttgacggatgcgtcgatggtcgcg
gtcgccgacgcgatcggaacggccgagcacacgttgatcgggccgcactcggtgcgcccg
ttcgtggccgccgcaatcgcgcagcgcacccaacttttgatcgtcaccgcgacgggacgc
gaagccgacgacctgacgagtgaactcacccagattctcggtgacggcgtcgccatgttc
ccgtcgtgggagacgctgccgcacgaacggctctccccgagcgccgataccgtgggcaag
cggctcgatgtgctccgtcgtctcgcccgccccggcgacagcgactacggcgatccgctg
cgtgtcatcgtcaccaccgtccgctcgctggtgcagccgatggccccgggtctcggcgag
atcgaacccgtcacgctcaaggtcggtctcgatctggacttcgacgggctgatccatcgc
ctcgtcgaattcggctacctgcgcgtcgacatggtgggcaagcgcggcgaattcgccgtc
cgcggcggcattctcgacctgttctcgccgacggcagatcacccggtgcgcgtggaattc
tggggcgacgagatcaccgagcttcgcgcgttcgcggtctccgatcagcgttcgctgccc
gatcacgaggtcgatctcgtcatcgcgccgccgtgccgagaattgcttctcacgcaggaa
gttcgcgatcgcgcggccgtgctcgccgccgacaatgccggtgacaccgcgttggtcgag
atgctggacaagctgtcggccggagtcccggtggagggcatggaggcgctgctgccgctg
ctgcaacccggcgagttgcaactgctcgccgacacactgcccgccgggacccacgtcctg
ctctgcgatcccgagcgaatccgaactcgcgcaaccgatttggtccgcaccggacaggaa
ttcctcgaagcgtcctggactgcggcatccatcggtggagccgcgccactggatacgtcc
accctcgatacgtccagcctcgagggggcctcgctcgatctcggtgcctccgcgtaccgc
tcgctgcggcaggtacgcgagtcggcccaggtgcacggccggccgtggtggaccatcagc
cccttggcgtcgggcaacggcgaagaagtggagctcgccgtcgatccggtgcccgaggtg
cgaggttccgaggaagcgttgacggcgctgtacgccaccctgcgagttcacatcgccacc
gggggacgggccgtcatctccgtggccggagccggcaccgccaagcgcatcatcgagcgc
ctcgccgaggccgaagtgcctgccgcacatctcgattccggtgccgtcccggttccggac
gtcgtcaacgtcttgtgcggatcgttgcacgacggtctggtgtttcccgacgcgaagctc
gtggtcgtcaccgagagcgacctcaccggcaaccgtgtcgcggcggcgggggaggggcgc
aagctaccggcgaagcgtcgcaatcaggtcgatccgctggctctcgtcgccggcgacagc
gtcgtccacgatcaacacggcatcggccggttcgtcgagatggtcgagcgcaccatcggc
ggtgccaggcgcgaatacctcgtcgtcgaatacgcgccgagcaagcgcggtcatcccggc
gaccgcctgttcgtgccgatggattcgctcgatcaactctcgcgctacgtcggcggcgaa
ctgccgacactgagcaagctcggcgggtccgactgggcgaacaccaaacgcaaggcgcgc
aaggcggttcgcgagatcgccggcgaactcgtgcaactgtatgccgctcgtcaggcggct
ccggggcacgccttcggggccgacactccgtggcagcgcgagatggaagatgcgttcggg
ttcaccgagacggtcgatcagatgacggccatcaccgaggtcaaggccgacatggagaag
gccgtcccgatggaccgcgtcatcctgggcgacgtgggttacggcaagaccgagatcgct
gtgcgtgccgcgttcaaggcagttcaggacggcaagcaggtggccgtcctggtcccgaca
acgcttctcgcgcaacagcatctgcagacgttcaccgcgcggatggcgtcgttcccggtg
acggtcaaggggctctcgcgcttcacccacggtgccgattccaaagaagtgatggccgga
ttggccgacggcaccgtcgacatcgtcgtcggcacgcacaggttgctgcagaccggtgtc
gcctggaaggacctcggcctggtcatcgtcgacgaggagcagcgtttcggcgtcgagcac
aaggagcacatcaagtcgctccgtactcacgtcgacgtgctgacgatgtcggccaccccg
attccgcgaacgctggagatgagcctggcgggcattcgcgagatgtcgaccatcctcacc
ccgcccgaggagcggcatccggtgctgacctacgtcggcgcgtacaacgacaagcaggtt
gccgccgccattcggcgtgaattgttgcgcgacggccaggtgttcttcgtgcacaaccga
gtgagctcgatcgacaaggccgccaagaagattcgtgatctcgtccccgaggcgcgggta
gcgacggcgcacggtcagatgaacgaggaaactctcgaacgcaccgtgcagggtttctgg
caacgcgagaccgacgtgctggtgtgcaccaccatcatcgagaccggtctcgacatctcc
aacgccaacacgctgatcgtcgaacgctccgattcgctcggcctgtcccagctgcatcag
ctgcgcggtcgagtgggtcgtagccgcgaacgcgggtacgcgtacttcctgtacccgccg
gagaagccgctcaccgaaaccgcctacgaccgtttggcgaccatctcgcagaactccgac
ctcggagccggtatggccgtggcgatgaaggacctcgaaattcgtggtgccggaaacgtt
ctgggagccgagcagtcgggccacgtcgccggcgtcggattcgatctgtacgtgcggctc
gtcggtgaagcggtcgaggcctaccgcgctgccgccgacggtaagccgatcacgacggac
gaggcacccaaggaagtgcgtatcgaccttcccgtcgacgcgaacatcccgccggattac
gtcaccagcgaccggcttcggctcgagggctaccggaaactcgccgccgcggccgactcc
gaaggcatcgacgccgtcatcgacgaactcgtcgatcgctacggcccgctacccgaggag
gtcggacgcctggtctccatcgcgaagctgcgcctgatcgccaaggaatacggcctgacc
gacgtcaatgtggccgggacacaggtgaaattggctccgatggacctgcccgattccaaa
cagatcaggctcaagcgcctctacccgagcgcgacgtaccgtgcgaccaccggagtggtg
cagctgccgttgccccgcgtcgaaggcggcggtgtcggagcggcgcgcgtccgcgatgtc
gaattggtgcagttcatcgccgatctcatcctatccttggacgggaagccatctcggtcc
gtcctgttggagcaaactgtgggggtgtag
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integrated database retrieval system
