Rickettsia felis: RF_1146
Help
Entry
RF_1146 CDS
T00252
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase beta chain
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
rfe
Rickettsia felis
Pathway
rfe03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rfe00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
RF_1146 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rfe03021
]
RF_1146 (rpoB)
03400 DNA repair and recombination proteins [BR:
rfe03400
]
RF_1146 (rpoB)
Enzymes [BR:
rfe01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
RF_1146 (rpoB)
Transcription machinery [BR:
rfe03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
RF_1146 (rpoB)
DNA repair and recombination proteins [BR:
rfe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
RF_1146 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
Motif
Other DBs
NCBI-ProteinID:
AAY61997
UniProt:
Q4UKD4
LinkDB
All DBs
Position
complement(1218639..1222760)
Genome browser
AA seq
1373 aa
AA seq
DB search
MVSLRDNIEAQPLSHNRRIRKNFGHINLVADIPNLIEIQKNSYEKNFLQLNIKDSERKNK
GLQSILNSIFPISDSSNIANLEFVKYEFDTPKYDVEECSQRSLSYAAPLKVTLRLSIWDI
DEDTGTREIKGIKEQEVYMGDIPLMTKNGTFIINGTERVVVSQMHRSPGVFFYHDEGKVH
SSGKLLYSARVIPYRGSWLDLEFDAKDVIYFRIDRKRKLYATTLLRAIGMSTEEIIKFYY
NSVTYKLVKNKGWAVKFIPQHITAHRLTSDLVDADTGNVLLKAGQKITPRLAKKYFGEGL
NNILVAHETLIGKYLSEDLRDPASDEVLAKIGEMITSDMLNVINDLKIKNVNVLVINPQS
GPYIRNTLFADKNQDREAALCDIFRVLRPGEPANIEAAENLFYNLFFDAERYDLSEVGRI
KMNSRLELNISEEVTVLTIDDIKNIVRVLVELKDGKGIIDDIDHLGNRRVRSVGELIENQ
FRIGLVRMEKSVIERMSAGDVDTVMPHDLVNSKILVSVVKEFFSTSQLSQFMDQTNPLSE
ITHKRRLSALGPGGLSRDRAGFEVRDVHPTHYGRICPIETPEGQNIGLINSMATYARINK
HGFIESPYRRVKDRHVTDEVVYLSAIEEGKYKIGQANSKVDKDGKLQGEFINCRVEGGNF
VMVEPQEVDFIDVTPMQVVSVAASLIPFLENDDANRALMGSNMQRQAVPLIKTDAPFVGT
GVEGVVAKDSGASVLALHDGIVEQVDSNRIVIRTLEQKIDGSPSVDIYNLLKFQKSNHNT
CINQKPLVKVGHYVKKNDIIADGPSTDNGEIALGRNVLVAFLPWNGYNFEDSILISERIV
KEDVFTSIHIEEFEVIARDTRLGPEEITRDIPNVSEEALRHLDEVGIIYVGAEVKAGDIL
VGKVTPKSESPITPEEKLLRAIFGEKAFDVKDSSLHVPSGVSGTVVEVRVFSRRGVEKDQ
RAIAIEKQQIEKLAKDRDDELEIIEHFVFSWLEKLLIGQVIVNGPKQVKAGQTITSEMLK
GLSKGQFWQLTVEDANVMNEIEQIKVHYDEKKDALDKRFATKVEKLQSGDDLPQGALKVV
KVFIATKHKLQPGDKMAGRHGNKGVISRIVPEEDMPFLEDGTVVDIVLNPLGLPSRMNIG
QILETHLGWASINLAKKISTLVKEYKNKHIGIEQIKKFLLELYGENINYILERSEEEIIS
FCNKVSKGVHFATPVFDGAKVQDVKDMLKLAGQDPSGQVKLIDGRTGEYFDRLVTVGQKY
LLKLHHLVDNKIHSRSIGPYSLVTQQPLGGKSHFGGQRFGEMECWALQAYGAAYTLQEML
TVKSDDVNGRIKTYDSIVRGENNFESGIPESFNVMIKEFRSLCLNVKLEVTSS
NT seq
4122 nt
NT seq
+upstream
nt +downstream
nt
atggtttcattaagggataatatagaagcacaacccttgtcacataatagaagaataaga
aaaaatttcggtcatataaatttagtagcagatataccgaatttgattgaaattcaaaaa
aattcatatgaaaaaaactttctacagttaaatattaaagattctgaaagaaaaaataaa
ggtttacaatctatattaaactcaatttttcctatttcagattcctccaatattgctaat
ttagaatttgtaaaatatgaattcgatactccaaaatatgatgtagaagagtgcagtcaa
agaagtttaagttatgctgctcctcttaaagttactttaaggttaagtatttgggatata
gatgaggataccggtactagagaaattaaagggattaaagagcaagaagtatatatgggt
gatatcccattaatgactaaaaacggtacttttatcattaacggtacagaaagagtagtt
gtatcgcaaatgcatcgctcacctggcgtattcttttatcatgatgaaggaaaagtccac
tcttccggcaagcttttatattctgctcgtgttattccatatagaggatcttggcttgat
ttagaattcgacgctaaggatgttatttattttaggattgatagaaaaagaaagctttat
gctactactttgcttagagctataggtatgagtactgaagaaattataaaattttattat
aattcagtaacttataagcttgttaaaaataaaggttgggcggttaaatttatacctcag
catattactgctcatcgtttaacaagtgatttagtagatgcagataccggaaatgtttta
ctgaaagcagggcaaaaaattactccgcgtttagctaaaaaatatttcggggaagggctt
aataatattttagtagctcatgaaactttaatcggcaaatatctatccgaagatttaagg
gatcctgcaagcgatgaagtattagcaaaaatcggtgaaatgataactagcgatatgcta
aatgttattaatgatcttaaaattaaaaatgttaatgtattagtaatcaatcctcaatcc
ggtccatatataagaaataccttatttgctgataagaatcaggaccgtgaggcagcatta
tgtgacatttttagagttttaagacccggtgaacctgctaatatagaagcggctgaaaac
ctgttttataatttattctttgatgcggaaagatatgacctttcagaagtcggacgaata
aaaatgaattctaggttagagctgaatatttctgaagaagttacggttttaacaattgat
gatattaaaaatatcgtaagagttttagtagagcttaaagacggtaaaggtatcatagac
gatattgatcatttaggtaatagaagggttagatcggtaggtgaattgatagaaaatcaa
tttagaataggtttagtccggatggaaaaatctgtaattgaaaggatgtcggcaggtgat
gttgataccgtaatgcctcatgatttagtaaattccaagattttagtttcagtcgtaaaa
gaattttttagtacctcccaattatcccaatttatggatcaaacaaatccattatcggaa
ataactcataaaagaaggctgtcggcactcggtcccggggggcttagtcgagatcgagca
ggttttgaggtgcgtgacgtacatccgactcattacggtcgtatttgtcctattgaaaca
cctgaaggtcagaatatcgggttaattaactctatggctacttatgctaggataaacaaa
cacggttttatagagagtccgtatagaagagttaaagataggcatgtaactgatgaagtg
gtatatctttctgctattgaagaaggtaaatacaaaattggacaagcaaattctaaagtt
gataaagacggaaagttacaaggagagtttattaattgccgtgttgaaggcggtaatttt
gtaatggtagaaccgcaagaggtagattttattgatgtgactcctatgcaggtagtatcg
gttgcggcttctcttatacctttcttagaaaacgatgatgctaaccgtgctttgatgggt
tcaaacatgcaaagacaagccgttcctttaattaaaacagatgcaccttttgtaggtacc
ggagttgaaggggtagtagctaaagattccggagcatcagtacttgcattacatgacggt
attgttgagcaggtagattcaaatagaatagtgattagaactctagaacaaaagattgac
ggttctccttctgttgatatttataatttattaaaattccaaaaatccaatcataatact
tgtataaatcaaaagcctttagttaaggtcggtcattacgttaagaaaaacgatattata
gctgatggtcctagtacggataacggtgaaattgctttaggtagaaatgtgcttgtggct
ttcttaccttggaacggttataattttgaagattcaattttaatatctgaacgtatagta
aaagaggatgtatttacatctattcatattgaagagtttgaagtaatagctagagataca
cgccttggtcctgaagaaattacccgtgatataccgaatgtaagcgaagaagcgttgcgt
catcttgatgaagtcggaataatttatgtaggtgcagaagtaaaagccggtgatatttta
gtcggaaaagtaacaccgaaaagtgaatcgcctattactcctgaagagaagctactacgt
gctattttcggggaaaaagcttttgatgtaaaagattcatctctgcatgtaccttccgga
gttagcggaactgtagtagaagtaagggtattttctcgtaggggtgtagaaaaagaccag
cgagctattgctattgaaaaacaacaaattgaaaaattagcaaaagacagagacgacgaa
ttagaaattattgagcattttgtgtttagttggcttgaaaagcttttaatagggcaggtg
attgttaacggtcctaagcaagtaaaagcaggacaaacaattactagtgaaatgctaaaa
ggtttatctaaagggcaattttggcagcttaccgtggaagatgcaaatgtaatgaatgaa
atagagcaaattaaagttcattatgatgagaaaaaagatgccctcgataaaagatttgct
actaaggtagagaaattgcaaagcggtgatgatttacctcagggagctttaaaagtagta
aaagtatttatcgcaactaagcataaattacagcccggggataagatggcaggaaggcac
ggaaataaaggggttatttcacgtatcgtacctgaagaagatatgccgtttttagaagat
ggaactgtggtagatatcgttcttaaccctctaggccttccgtctcgtatgaatataggg
cagattttagagacgcatcttgggtgggcatcaataaatttagcaaaaaaaatatctacc
ttagtaaaggaatataaaaataaacatataggtattgagcagattaagaaattcttactt
gagctatacggagagaatattaattatatacttgaaagatcggaagaagagattatatct
ttctgtaataaagtaagtaaaggcgtacattttgcaactcctgtatttgacggagcaaaa
gttcaggacgttaaagatatgttaaaacttgccggtcaagatccttcaggacaagtaaaa
ttaattgacggtagaaccggtgaatattttgaccgtctagtgaccgttggacagaaatat
ttgctgaagctgcatcacttagtcgataataaaattcactctcgttctataggaccttat
agcttagtaactcagcaaccgcttggaggtaagtctcatttcggtggacagcgtttcgga
gaaatggaatgctgggcattacaagcttacggtgcggcttatacgttacaggaaatgtta
acggttaagtcggatgacgtaaacggtaggatcaaaacttacgattctatagtacgtggt
gaaaataattttgaatcaggcattcctgaatcatttaatgttatgataaaagaatttaga
tctttatgtcttaacgtaaagcttgaagtaacttcgagctag
DBGET
integrated database retrieval system
