Roseomonas fluvialis: Rmf_25350
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Entry
Rmf_25350 CDS
T08992
Symbol
mfd
Name
(GenBank) transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
rfl
Roseomonas fluvialis
Pathway
rfl03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rfl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Rmf_25350 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rfl03400
]
Rmf_25350 (mfd)
Enzymes [BR:
rfl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Rmf_25350 (mfd)
DNA repair and recombination proteins [BR:
rfl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Rmf_25350 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
UB2H
AAA_16
RecG_dom3_C
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
BDG72606
LinkDB
All DBs
Position
complement(2612864..2616310)
Genome browser
AA seq
1148 aa
AA seq
DB search
MKPIAVHGAPEGFDALLLCRRRAETDAPVVHVCRDDARMARMAEAIGFFAPEVEVLRFPA
WDCLPYDRVSPNPEIVAERVATLTRLLEAPTRPRILLTTVNALAQKVPPPATFQDATMTL
RKGGRVQPEALTAFLESNGYHRTGTVMEHGEYAVRGGIIDLYPAGESDPVRLDLFGDEIE
DLRRFDTATQRSGKVVPELRLRPVGEVFLDEASRARFRSAYRELFGAAAAEDPLYVSVSA
GRKHPGMEHWAGLFHQHMATLIDYLPGASVSLDHQAEDVATARFEMVADHYEARRVPVRI
AEGEVPYRPAPPATLHLTRDDWNVMLSGGPVLQFIPFALADAAEGIEAGGRPGPLLTEAR
TAGENVFAAYAVMVAGQMKARRRPLLAAWSKGSRERMANLLRENGVAAAPAEDWKAARAL
PDGVVALVVMGLERGFVADGICVTAEQDILGERIARPPRRRRRADQFIADATEIADGDLV
VHQDHGIGRYEGLITIEVNGAPHDCLKLTYDGGDRLFVPVENIEILSRFGTETAGVALDK
LGGVSWQNRKAKAKSRIRDMAGELIRTAAMRRMKDGALATPPEGVWDEFCSRFPFAETED
QTRAIADVLEDLSAGRPMDRLVCGDVGFGKTEIALRAAFVVAMSGAQVAVVVPTTLLARQ
HARTFTARFAGFPLVVAQLSRMVTAKEAAEVREGLKDGRINIVVGTHALLAKGIEFADLG
LVIVDEEQHFGVKHKEALKALKSDVHVLTLTATPIPRTLQLALTGVREMSIIATPPVDRL
AVRTFIMPWDPVVLREAIQRERFRGGQIFCVVPRIEDMAKVAERLAEIVPEARTIQAHGR
LSPTELERVMTEFGDGKHDVLLSTNIVESGLDMPAVNTLLIHRADMFGLAQLYQLRGRVG
RGKLRGYAYLTWPESHRLSAAAQKRLDVMQTLDNLGAGFTLASHDLDIRGAGNLLGEEQS
GQIREVGIELYQQMLEEAVADIKAGQGRDGGASERDWTPQINLGLPVLIPETYVADLPVR
LGLYRRIGGLASDGETDAMGAELADRFGPVPTEVENLLQVVTIKRLCREAGVEKLDAGPK
GIVLSFRGNRFSNPAGLVAWVTSQKTAVKLRPDHKLALLREMDLAARVKAARELLGALAR
VARTARAA
NT seq
3447 nt
NT seq
+upstream
nt +downstream
nt
ttgaagcccatcgcggtccatggcgcgccggagggcttcgacgccctgctgctgtgccgg
cgccgcgccgagaccgacgcgccggtcgtgcatgtctgccgcgacgacgcccgcatggcg
cgaatggcggaggcgatcggcttcttcgcccccgaggtcgaggtgctgcgcttcccggcc
tgggattgcctgccctatgaccgcgtctcgcccaatcccgagatcgtcgccgagcgcgtc
gcgacgctgacgcgcctgctggaggcgcccacgcgtccgcgcatcctgctgaccacggtg
aatgcgctggcgcagaaggtgccgccaccggcgaccttccaggacgccaccatgacgctg
cgcaagggcgggcgcgtgcagcccgaggcgctgacggctttcctggaatcgaacggctac
caccgcaccggcacggtgatggagcacggcgaatacgcggtgcgcggcggcatcatcgac
ctgtatccggccggcgaatcggacccggtacgcctcgatctgttcggcgacgagatcgag
gatctgcgccgcttcgacacggccacgcagcgcagcggcaaggtggtgccggaactgcgc
ctgcggccggtgggggaggtgttcctcgacgaggcgtcgcgcgcgcgcttccgctcggcc
taccgcgaattgttcggcgctgcggcggcagaggacccgctctatgtgtccgtcagcgcg
gggcgcaagcatccgggcatggagcactgggccggcctgttccaccagcacatggcgacg
ctgatcgactacctgccgggagcctcggtcagcctcgaccatcaggcggaggatgtcgcg
accgcgcgcttcgagatggtggcggaccactatgaggcgcgacgcgtcccggtgcgcatc
gccgaaggggaggtgccctatcgcccggcgccgcctgccacgctgcacctcacgcgcgac
gactggaacgtgatgctctccggcgggccggtgctgcagttcatccccttcgcgctggcc
gatgcggccgaaggcatcgaggccggtggccgccccggcccgctgctgaccgaggcgcgc
accgccggcgagaatgtctttgccgcctatgccgtgatggtcgcgggacagatgaaggcc
cggcgccggccgctgctggcggcctggtccaagggttcgcgcgaacgcatggcgaacctg
ctgcgcgaaaacggcgttgccgccgcgccggccgaggattggaaggccgcgcgcgcgctg
ccggatggcgtcgtcgccctggtggtgatggggctcgagcgcggcttcgtcgccgatggc
atctgcgtcaccgccgagcaggacattctgggcgaacgcatcgcgcgcccgccgcgccgg
cgccgtcgcgccgaccagttcatcgccgatgccaccgaaattgcggatggcgacctggtt
gtgcaccaggaccacggcatcggccggtatgagggcctcatcaccatcgaggtgaacggc
gcgccgcatgactgcctgaagctgacctacgacggcggcgaccggttgttcgtgccggtc
gagaacatcgagatcctgtcgcgcttcggcaccgagaccgcgggcgtggcgctcgacaag
ctcggcggcgtgtcgtggcagaaccgcaaggccaaggcgaagtcgcgcatccgcgacatg
gcaggagaactgatccgcaccgccgcgatgcgccgcatgaaagacggcgcgctggccacg
ccgcccgagggcgtgtgggacgaattctgttcccgcttccccttcgctgagaccgaggac
cagacccgcgccatcgcggatgtcctggaagacctctccgccggtcgcccgatggaccgg
ctggtctgcggcgatgtcggtttcggcaagaccgagatcgctttgcgcgccgccttcgtg
gtggcgatgtcgggtgcgcaggtggcggtggtggtgccgaccacgctgctcgcgcgccag
catgcgcgcaccttcaccgcgcgcttcgcgggcttcccgctggtggtcgcacagctgtcg
cgcatggtcaccgcgaaagaggcagccgaggtccgcgaggggctgaaggatggccgcatc
aacatcgtggtcggcacgcacgcgctgctcgcgaagggcatcgaattcgccgacctcggc
ctggtgatcgtggacgaggagcagcatttcggcgtgaagcacaaggaagcgctgaaggcg
ctgaaatccgacgtgcatgtgctgacgctgacggccacgcccatcccgcgcacgctgcaa
ctcgcactcaccggcgtgcgggagatgagcatcatcgccaccccgccggtcgaccggctt
gcggtgcggaccttcatcatgccctgggacccggtggtcttgcgcgaggcgatacagcgc
gaacgcttccgcggtgggcagatcttctgcgtcgtgccgcgcatcgaggacatggcgaag
gtggccgaacggctcgccgagatcgtgcccgaggcgcgcaccatccaggcgcatgggcgg
ttgtcaccgaccgagttggaacgcgtgatgacggagttcggcgacggcaagcacgacgtg
ctgctgtccaccaacatcgtcgaatccggcctggacatgccggcggtgaacacgctgctg
atccaccgcgcggacatgttcgggctggcgcagctatatcagctgcgcggccgcgtgggc
cgcgggaagctgcgtgggtatgcgtatctcacctggccggaatcgcatcggctgtcggcg
gcggcgcagaagcggctcgatgtgatgcagacgctggacaatcttggcgccggcttcacg
ctggcctcgcacgacctggatatccgcggcgcgggcaacctgctgggcgaggagcagtcg
ggccagatccgcgaggtcggcatcgagctttaccagcagatgctcgaggaagcggtggcc
gacatcaaggccgggcagggcagggatggcggcgcgagtgagcgggactggacgccgcag
atcaatctcggcctgccggtgctgatcccggagacctacgtggccgacctgccggtgcgc
ctgggcctgtaccgccgcatcggcggcctcgcgtccgatggcgagacggatgcgatgggc
gccgaactggccgaccgcttcggcccggtgccgaccgaggtggagaacctgctccaggtc
gtcaccatcaagcgcctgtgccgcgaggcgggcgtcgagaagctggatgccggaccgaag
ggcatcgtgctgtctttccgcggcaatcggttcagcaaccccgccgggctggtggcctgg
gtgacgtcgcagaagaccgcggtgaagctgcggcccgaccacaagctggcgctgctgcgc
gagatggacctggcagcgcgcgtgaaagcggcgcgggagttactcggggcgctcgcgcgt
gtcgctcggacagcgcgcgccgcttag
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integrated database retrieval system
