Roseomonas fluvialis: Rmf_52510
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Entry
Rmf_52510 CDS
T08992
Name
(GenBank) double-strand break repair protein AddB
KO
K16899
ATP-dependent helicase/nuclease subunit B [EC:
5.6.2.4
3.1.-.-]
Organism
rfl
Roseomonas fluvialis
Brite
KEGG Orthology (KO) [BR:
rfl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rfl03400
]
Rmf_52510
Enzymes [BR:
rfl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Rmf_52510
DNA repair and recombination proteins [BR:
rfl03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
Rmf_52510
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDDEXK_1
Motif
Other DBs
NCBI-ProteinID:
BDG75322
LinkDB
All DBs
Position
5458559..5461588
Genome browser
AA seq
1009 aa
AA seq
DB search
MNLYAIPPAAPFLDTLAAGVLARLPDGAPDALARTTILLPTRRAARALREAFLREAGGRA
LLLPRMRALAGLSTEDADELALPDLLDLPPAVDPLTRQAVLAEMATRIPRRAGGPATPEQ
AWLLAGEMARLFDEIALEEPDLAMLESRPPAEFAQAWLARLDALVPDRHARHWEITTAIL
RAAATDWNDWLADRGLLDIGVRRVKALAAQAAAWRDAPPEHPTVAAGIGAGGTIPAAAAL
LGILARAPQGAVVLQGLPEPMDAAVWEAVRKAPTHPLAGHARLLAAMDAQSADLRPWHDP
APRGAAADRAVLLGRALAPAEGLEAWTQRDTPRWDAARKGLTRLVAADAQQEAAAIALLL
REAMETPGHRAALVTPDRDLARRVSAELARHGITADDSAGEPLAETPAAAFLRLVARMLA
DGFAPVPLLSVLKHPLCSGGMARDAWLAAARTLERIALRGPRPAAGLAGLRASVTAAGDA
PDSVVALLDALEGALAGFDALPDAPARPPADLLAAHMAAAEALAATPELPGGLRLYAGEE
GEPLARHLDALASALPHLPPISPADWPDLFEGALAGPVAPSLRATRGRAAAAHPRIAILG
LLEARLQCFDRVVLGALEESVWPQATEPGPWMSRPMRAAFGLPEAEARIGRVAADFLYAA
AAAPEAVFSSAVRRGGAPRVPARWMVRVDTFLAGQGGLALAASPAAGWAAALDAPAVVQP
CARPAPTPPAVLRPRRLTVSDAALLIADPYAFYAKRVLRLQPLKALEEDVGAIEYGTLVH
DAMAGFLRALPMNWPGEQAARAAWARASEKALAAHADRPGILAFWAPRLANIGDFVIAEE
AALRRDGGLVSCLVETKGKVVLPLQGGDVEIEARADRLDHLSAGGWRVVDYKTGTVPKEA
ALVAGDAPQLPIEAWLLSEGAFGGTPGTATALVYWRLTGGEQPGEVKTIDATAQDYAAIA
QERLENLAARWLLGDAPFASRPHPSRSAPGGDYDHLARIEEWSAGEAEP
NT seq
3030 nt
NT seq
+upstream
nt +downstream
nt
gtgaacctttacgccatcccgcccgcggcgccgttcctcgacacgctcgcggccggtgtg
ctggcgcgcctgcccgacggcgcgccggatgcgctggcgcgcaccaccatcctgctgccc
acgcgccgcgccgcacgtgcgttgcgagaggccttcctgcgcgaagccggcgggcgcgcg
ctgctgctgccgcgcatgcgcgccctggccggcctgtcgaccgaggatgcggacgagctc
gccctgcctgacctgctcgacctgccgcctgccgtcgatccgctgacgcgccaggccgta
ctggccgagatggccacgcgcatcccgcgccgcgccggcggccccgcaacgcccgaacag
gcttggctgctggctggcgaaatggcgcggttgttcgacgagatcgcgctcgaggaaccc
gacctcgcgatgctggaatcgcgcccgccggcggagttcgcgcaggcctggctcgcgcgg
ctcgatgcgctggtgcccgaccggcacgcgcggcactgggagatcacaactgccatcctg
cgcgccgcagcgaccgactggaacgactggctggcggatcgcgggctgctcgacatcggt
gtgcggcgcgtgaaggcgctggcggcgcaagcggcggcgtggcgcgacgcgccgcctgag
catccgaccgtcgcggccggtatcggcgcgggtggcaccatcccggccgccgccgcgctg
ctggggatcctggcgcgcgcgccgcagggggcggtggtgctgcagggcctcccggaaccg
atggacgccgcggtgtgggaggcggtgcggaaggcgccgacgcatcccctggccggtcat
gcgcgcctgctggcggcgatggatgcgcaatcggccgacctgcggccctggcacgacccc
gcgccacgcggcgcggcggcggaccgtgccgtgctgctcggccgtgcgctggcacccgcg
gaggggctcgaggcctggacacagcgcgacacgccgcgctgggatgcggcgcgcaaaggc
ctgacgcgcctggttgccgccgatgcgcagcaggaagccgccgccatcgcgttgctgctg
cgcgaggcgatggagacgcctggccatcgcgctgcactggtcacgcccgatcgcgacctg
gcgcggcgcgtgagtgccgaactcgcgcgccacggcatcacggccgacgacagcgccggc
gaaccgctggcggaaacacccgccgccgccttcctgcgcctggtcgcgcgcatgcttgcc
gacggcttcgcgccggtgccgctgctgtccgtgctgaagcatccgttgtgcagcggcggc
atggcgcgcgacgcatggctggcggcggcacgcacgctggaacgcatcgcgctgcgcggg
ccgcgcccggccgcggggctggccgggttgcgggcatcggtcacggcggcgggagacgcg
cccgattcggtggttgcgctgctcgatgcgctggagggcgcattggccggcttcgacgcg
ctgcccgatgcgccggcacgaccgccggccgacctgctggccgcgcacatggcggcggcc
gaggcactggccgccacgcccgaattgcctggcgggctgcgcctgtacgcgggcgaggag
ggcgagccgctggcgcggcacctcgatgcgctggcctcggcgctgccccatcttccgccg
atctcgcccgccgactggccagacctgttcgagggcgcgctcgccgggcctgtcgcgccg
tccctgcgtgcgacacgcgggcgcgcggcggcggcgcatccgcgcatcgccatcctcggc
ctgctggaagcgcggctgcaatgcttcgaccgcgtggtgctgggtgcgctcgaggaaagc
gtctggccgcaggcgacggaaccaggcccgtggatgagccggcccatgcgcgcggcgttc
gggctgccggaggcggaagcacgcatcggtcgcgtcgcggcggatttcctgtacgcggcg
gcggcggcgccggaggcggtgttctcctccgcggtgcggcgtggcggggcgccgcgtgtg
ccggcgcgctggatggtgcgcgtcgacaccttcctggcgggccagggcgggttggcgctg
gcggcttcgcccgccgctggatgggcggcggcgctggacgcgcccgcggtggtgcagccc
tgcgcacggccggcccccacgccgcctgcagtactgaggccgcggcggctgaccgtgtcc
gacgccgcgctgctgattgcggatccctacgccttctatgcgaagcgcgtgctgcggctg
caaccgctcaaggcgctggaggaagatgtcggcgcgatcgaatacggcacgctggtgcat
gatgcgatggcggggttcctgcgcgcacttccgatgaactggccgggcgagcaagcggcg
cgcgcggcctgggcacgagccagcgagaaggccctcgccgcgcatgcggaccggccgggc
atcctggcgttctgggcgccacggctggcaaatatcggcgacttcgtgatcgccgaggaa
gccgctctgcgccgcgatggcggactggtctcctgcctggtcgagacgaagggcaaggtt
gtgctgccgctgcagggcggcgacgtcgagatcgaagcgcgcgccgatcggctggatcac
ctctcggccggcggctggcgcgtggtggactacaagaccggcacggtgccgaaggaagcc
gcgctggtcgccggcgacgcgccgcaactgccgatcgaggcctggctgctcagcgagggc
gccttcggcggcacacccggcaccgcgacggccctggtgtattggcgcctgaccggcggc
gagcagccgggcgaggtcaagaccatcgacgcgaccgcgcaggactatgcggcgatcgcg
caggagcggctggagaatctcgcggcgcgctggctgctgggcgatgcgcccttcgcgtcg
cgcccgcatccctcgcgcagcgcgccggggggcgactacgaccacctcgcgcggatcgag
gaatggtcggccggcgaggccgagccatga
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