Reinekea forsetii: REIFOR_00404
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Entry
REIFOR_00404 CDS
T05208
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
rfo
Reinekea forsetii
Pathway
rfo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rfo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
REIFOR_00404
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rfo03019
]
REIFOR_00404
03009 Ribosome biogenesis [BR:
rfo03009
]
REIFOR_00404
Enzymes [BR:
rfo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
REIFOR_00404
Messenger RNA biogenesis [BR:
rfo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
REIFOR_00404
Ribosome biogenesis [BR:
rfo03009
]
Prokaryotic type
rRNA helicases
REIFOR_00404
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_19
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
ATX75579
UniProt:
A0A2K8KNB0
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All DBs
Position
complement(415975..417753)
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AA seq
592 aa
AA seq
DB search
MSENITFADLGLTPAILATLESLGYESPTPIQSQAIKSLMEGRDVLGLAQTGTGKTAAFS
LPLLCKIDTSLNTPQALVLCPTRELAIQVAEAFQVYARGVKGFHVLPIYGGTDMRNQLRA
LKQNPQVIVGTPGRVMDHLRRGTLDLSDLKHMVLDEADEMLRMGFIEDINWILEHTPEEK
QTAMFSATMPGQIKRITDRYQKDPIKIEIKASSQEQSRIDQFVWRAQGLDKLEALTRLLE
VEEWNAIIIFVRTRVECQFLSEKLSARGYAATALSGEVAQKQREDILNSMRGGKLDILIA
TDVAARGLDIERITHVINWDIPGDVETYTHRIGRTGRAGRSGKAILFVKPREQRILRDIE
RATKSVLKDYPMPSAAQLGEYRAEQFKASVSELVEKGSLDYFKAMVTSWIEAEDEEVDIL
DIAAALAKMAQEDKPLQIPKDPVVHARSRESHDRNDRGDRGDSRPSRPRSDSAPGRKREL
SYDASTYRLDIGRQDGVEAGSIVGAIANEGGIEGRFINNITIKDTFTLVDLPKGMPADIL
QHLQKTRVKGRPLNIREWSESTPAGGAERKPAPRRDASGSSDRKPAPRRRSE
NT seq
1779 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaaaacatcacctttgccgacctgggcctaacgcctgctatattggccacgctg
gaatcattgggttatgaaagcccaaccccgattcaaagccaagctattaaatccctgatg
gaaggccgtgacgtactcggcttggcgcagaccggaaccggcaaaaccgccgccttctca
ctgcccttgctgtgtaagatcgacaccagcctcaacacccctcaggcactggttctgtgt
ccaacgcgcgagttggcgatccaggttgctgaagccttccaggtctatgcccgcggcgtg
aaaggttttcacgtcctgcccatttacggcggcaccgacatgcgtaaccagttacgcgcg
ttaaaacagaatcctcaagttatcgtcggcacaccaggccgcgtcatggaccacttgcgt
cgtggcaccctggatctgtccgatctgaagcatatggtcctcgacgaagccgacgagatg
ttgcgcatgggctttattgaagacatcaactggatcctggaacacaccccagaagaaaag
cagacggcgatgttttcggccaccatgcccggccagatcaagcgcatcaccgaccgttat
cagaaagatccaatcaagattgaaatcaaggccagcagccaagagcaaagccgcatcgat
cagttcgtctggcgtgctcagggtctggacaagttggaagctctaactcgtttgctcgaa
gtggaagaatggaatgccatcatcatcttcgtgcggactcgagtagagtgtcagttcctg
tcggaaaaactctcggcacgcggctatgcagccaccgccctgagtggtgaagttgcccag
aagcaacgtgaagacatactcaattcaatgcgcggcggcaagctggacatcctgatcgcg
accgacgttgccgcgcgcggcctggacatcgaacggatcacccacgtcatcaactgggat
atcccaggcgacgtcgagacctatacccatcgtattggccgtactggtcgagccggccgc
agtggtaaagcgatcctctttgttaagccacgtgaacagcggatcttgcgcgatatcgaa
cgggctactaagtcggtcctgaaagattacccgatgccgtcagcggcacagttgggcgaa
taccgggcggagcagttcaaagccagcgtgtccgagctcgttgaaaagggctccttggat
tatttcaaagccatggtgaccagctggatcgaagccgaagacgaagaggtcgatatcctc
gacatcgcagccgctctggctaagatggcgcaagaagacaagcctttgcagatcccgaaa
gatccggtcgtgcatgcgcgcagtcgcgaaagccatgaccgcaatgatcgcggtgatcgt
ggcgacagccggccaagccgcccacgctccgacagtgcgcccggtcgtaagcgtgaactg
agctatgatgccagcacctaccggctcgacatcggtcgtcaagatggcgtcgaagccggt
tccatcgttggtgccattgccaatgaaggcggcattgaaggtcgcttcatcaacaacatc
accatcaaggacaccttcaccctggttgacttacccaagggtatgccggccgatattctg
caacatctgcagaagactcgggttaagggacgaccattgaatatccgtgagtggtctgag
tcgactccagccggcggcgcagagcgcaagccagcaccacgtcgtgatgccagcggcagc
agcgatcgcaagccagcaccgcgtcgtcgttcagaatag
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