Rhinolophus ferrumequinum (greater horseshoe bat): 117011919
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Entry
117011919 CDS
T07722
Symbol
THOC1
Name
(RefSeq) THO complex subunit 1
KO
K12878
THO complex subunit 1
Organism
rfq
Rhinolophus ferrumequinum (greater horseshoe bat)
Pathway
rfq03013
Nucleocytoplasmic transport
rfq03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rfq00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117011919 (THOC1)
09122 Translation
03013 Nucleocytoplasmic transport
117011919 (THOC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rfq03019
]
117011919 (THOC1)
03041 Spliceosome [BR:
rfq03041
]
117011919 (THOC1)
Messenger RNA biogenesis [BR:
rfq03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
117011919 (THOC1)
Spliceosome [BR:
rfq03041
]
Complex C
Other components
EJC/TREX
117011919 (THOC1)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
117011919 (THOC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
efThoc1
Death
HsdM_N
Motif
Other DBs
NCBI-GeneID:
117011919
NCBI-ProteinID:
XP_032943595
Ensembl:
ENSRFEG00010018020
LinkDB
All DBs
Position
19:16798336..16845730
Genome browser
AA seq
657 aa
AA seq
DB search
MSPTPPLFSLPEARTRFTKSTREALNNKNIKPLLNTFTQLPGSENEKKCTLDQAFRGVLE
EEIINHSPCENVLAIISLAIGGVTEGICTASTPFVLLGDVLDCLPLDQCDTIFTFVEKNV
ATWKSNTFYSAGKNYLLRMCNDLLRRLSKSQNTVFCGRIQLFLARLFPLSEKSGLNLQSQ
FNLENVTVFNTNEQESTLGQKHTEDREEGMDVEEGEMGDDEAPTTCSIPIDYNLYRKFWS
LQDYFRNPVQCYEKISWKTFLKYSEEVLAVFKSYKLDDTQASRKKMEELKTGGEHVYFAK
FLTSEKLMDLQLSDSNFRRHILLQYLILFQYLKGQVKFKSSNYVLTDEQSLWIEDTTKSV
YQLLSENPPDGERFSKMVEHILNTEENWNSWKNEGCPSFVKERTSDTKPTRVVWKRTAPE
DFLGKGPNKKILMGNEELTRLWNLCPDNMEACKSETREYMPTLEEFFEEAIEQADPENMV
ETEYKAVNNSNYGWRALRLLARRSPHFFQPTNQQFKSLPEYLENMVIKLAKELPPPSEEI
KTGEDEDEEDNDALLKENESPDVRRDKPVTGEQIEVFANKLGEQWKILAPYLEMKDSEIR
QIECDSEDMKMRAKQLLVAWQDQEGVHATPENLINALIKSGLSDLAESLTNDNETNS
NT seq
1974 nt
NT seq
+upstream
nt +downstream
nt
atgtctccgacaccgccactcttcagtttacccgaagcgcggacgcggtttacgaagtct
accagagaggccttgaacaacaaaaatatcaaaccattgttgaataccttcacccagtta
cctggcagtgaaaatgaaaaaaaatgtacccttgaccaagctttcagaggtgttctagaa
gaagaaattataaatcattcaccatgtgaaaatgttttagctattatttctcttgctatt
gggggagtaactgaaggtatttgtactgcatctacgccatttgtgttgttgggagatgtt
ttggattgtcttcctttggatcagtgtgacacaatattcacttttgtggaaaaaaatgtt
gctacttggaaatcaaatacattctattctgctgggaaaaattatttactacgtatgtgc
aatgatctcctaagaagattatcaaaatcccagaatacagtgttctgtggacgaattcaa
ctctttttggccaggcttttccctttatctgagaaatcaggtcttaacttgcagagtcag
tttaatctggaaaatgtcactgttttcaataccaatgagcaggaaagcaccttgggtcag
aagcacactgaagatagagaagaaggaatggatgtggaagaaggtgaaatgggagatgat
gaagctccaacaacttgctccattccaattgattacaacctgtatcgaaaattctggtca
cttcaggattacttcaggaaccctgtgcaatgctatgagaagatttcatggaaaactttt
ctcaagtattctgaagaagttctagctgtttttaagagttataaattagatgatactcag
gcctcaaggaaaaagatggaagaattgaaaacaggaggggagcatgtatattttgcaaaa
tttttaacaagtgaaaagttgatggatttacaactgagcgacagtaactttcgtcgacac
atcctactgcagtatctcattttattccaatatctcaagggacaggtcaaattcaaaagt
tcaaactatgttttaactgatgaacagtcactctggattgaagatactacaaaatcagtt
tatcaactactatctgaaaacccacctgatggagaaagattttcaaagatggtagagcat
atattaaacactgaagaaaactggaactcatggaaaaacgaaggctgcccaagttttgtg
aaagaaagaacatcagataccaagccaacaagagtagtatggaagagaacagcaccagag
gacttcctagggaaaggacccaacaaaaagattctgatgggaaatgaggagttaacaagg
ctttggaatctctgccctgataatatggaagcctgtaaatcagagacaagggaatacatg
ccgactttggaggaattctttgaagaagccattgaacaggcggaccctgaaaacatggtt
gaaactgaatataaggctgtgaacaattcaaattatggttggagagccctgagattatta
gcacggagaagccctcatttcttccagccaacaaaccagcagtttaaaagtttgccagaa
tatcttgaaaacatggtaataaagctagcgaaggaattaccacctccttctgaagaaata
aaaacaggtgaggatgaagatgaggaagataatgatgctttactgaaggaaaatgaaagt
cctgatgttcggcgagacaaacctgtaacaggggaacaaatagaggtctttgccaacaaa
ctgggtgaacaatggaagattctggctccctacctggaaatgaaagactcagaaattaga
cagattgagtgtgacagcgaagacatgaagatgagagctaagcagctactggttgcctgg
caagatcaagagggagtacacgcaacgcccgagaatctgattaatgcactgattaagtct
ggattaagtgaccttgcagaaagtctaactaatgacaatgagacgaatagttag
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