Rhinolophus ferrumequinum (greater horseshoe bat): 117035168
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Entry
117035168 CDS
T07722
Symbol
LIG1
Name
(RefSeq) LOW QUALITY PROTEIN: DNA ligase 1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
rfq
Rhinolophus ferrumequinum (greater horseshoe bat)
Pathway
rfq03030
DNA replication
rfq03410
Base excision repair
rfq03420
Nucleotide excision repair
rfq03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rfq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
117035168 (LIG1)
03410 Base excision repair
117035168 (LIG1)
03420 Nucleotide excision repair
117035168 (LIG1)
03430 Mismatch repair
117035168 (LIG1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rfq03032
]
117035168 (LIG1)
03400 DNA repair and recombination proteins [BR:
rfq03400
]
117035168 (LIG1)
Enzymes [BR:
rfq01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
117035168 (LIG1)
6.5.1.6 DNA ligase (ATP or NAD+)
117035168 (LIG1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
117035168 (LIG1)
DNA replication proteins [BR:
rfq03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
117035168 (LIG1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
117035168 (LIG1)
DNA repair and recombination proteins [BR:
rfq03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
117035168 (LIG1)
NER (nucleotide excision repair)
Other NER factors
117035168 (LIG1)
MMR (mismatch excision repair)
Other MMR factors
117035168 (LIG1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
DDR
PucR
Motif
Other DBs
NCBI-GeneID:
117035168
NCBI-ProteinID:
XP_032984785
Ensembl:
ENSRFEG00010005427
LinkDB
All DBs
Position
15:complement(43785133..43819016)
Genome browser
AA seq
1060 aa
AA seq
DB search
MPRAASRLSSRRASRSGFPRNLLTSPVTLETRNHIPRPRAKEATGFSQRDLREGSPHFTP
SPGSLQPWRLQFPASTGPRRSGRLPGPAPQLGPAPGRRSLRANFVARIWDFSQAARGSGR
DAQNCGARGTTDRRRGEQRRDHSDATMQRSIMSFFYPKKEDKTKKPEKETSSSIKETEPP
PKVALKERNREVPDSDSPVKRPGRKAARVLCSEGEEEDEALMSPKSQKPAPDSPHVSPAS
PVPFPESSRSLSSTSPMRTSLSGIPKRRTARKQLSKRTIQNVLEEQSEDKDGDTKRKKEE
GAEAESLPEPEEAIEKETEEGDPPTATPEPPETSRAEPLTESSSEPGVAIKQEPQEEDPA
KPPRAPRTLSSFFTPRKPAIKKEVKEEESVTPRKEEPKGPLDPCSYNPAKNNYHPVEDAC
WGPGQKVPYLAVARTFEKIEEVSARLRMVETLSNLLRSVVALSPPDLLPIIYLSLNHLGP
PQQGLELGVGDGILLKAVAQATGRQLESVRAEAAEKGDVGLVAENSRSTQRLMLPPPALT
ASGVFTKFRDIARLTGSASTTRKMDIIKGLFVACRHSEARFIARALSGRLRLGLAEQSVL
AALAQAVSLTPPGQEFPPAVVDAGKGKTAEARKTWLEEQGMILKQTFCEVPDLDRIVPVL
LQHSLERLPEHCRLSPGVPLKPMLAHPTRGVSEVLKRFEEAAFTCEYKYDGQRAQIHVLE
GGEVKIFSRNQEDNTGKYPDVISRIPKIKLPSVTSFILDTEAVAWDREKKQIQPFQVLTT
RKRKEVDAAEIQVQVCLYAFDLIYLNGESLVREPLSRRRQLLRENFVETEGEFVFATSLD
TKDMDQIAEFLEQSVRDSCEGLMVKTLDVDATYEIAKRSHNWLKLKKDYLEGVGDTLDLV
VIGAYLGRGKRAGRYGGFLLASYDEESEELQAICKLGTGFSDEELEEHHQSLQALVLPSP
RSYVRADGAVAPDHWLEPSAVWEVKCADLSLXPIYPAARGLVDSEKGISLRFPRFIRIRE
DKKPEEATTSAQVAYLVQEAKSDSEAAQCRLRLRPGGFFY
NT seq
3183 nt
NT seq
+upstream
nt +downstream
nt
atgccccgcgcggcctcccgcctctcttcccgccgtgcctcgcgcagcggctttcctcgc
aatcttcttacttcgccagttactctggagacccgcaaccacatccctcggcccagagca
aaggaagccacgggcttttcccagcgtgatctgcgggagggctcgccccacttcaccccc
tctcctggcagcctccagccttggagactacaattcccagcgtccaccgggccgcgacgg
agcggacgtctcccaggtcccgccccacagctcggccccgcccccggccgccgaagtctg
cgcgcgaatttcgtggcgcgcatttgggacttcagtcaagcggccaggggttccggtcga
gacgcccagaactgtggcgcacggggaacaactgacaggagaagaggagagcagagaagg
gatcattctgacgccaccatgcagcgaagtatcatgtcatttttctaccccaagaaagag
gacaaaacgaagaagccagagaaggagacgtccagcagcatcaaagagacggagccccca
ccgaaggtggcactgaaggagcggaatagagaggtgcccgacagtgactctccagtgaag
aggccgggcaggaaagcggcccgggtcctgtgcagtgaaggggaggaagaggacgaagcc
ctcatgtcccccaaaagtcagaagccggccccggactcgccacacgtttcccctgccagt
cctgtcccgtttcctgagagcagccgttccctctccagtacctctccaatgcgcacctcc
ctgtcagggatcccaaagcgtcgcacagctcggaagcagctttctaaacggacaattcag
aatgttctggaagagcagagcgaggacaaggacggagacaccaagaggaagaaggaggaa
ggagcagaagcagaaagcctcccagagccggaagaggccatagagaaggaaacagaagag
ggggacccacccacggcaactcctgagcccccagagaccagcagagcagagcccctgaca
gaaagcagttcagagcctggtgtggcgataaagcaggagccacaggaggaggatccggct
aagccccccagggctcccaggacgctcagcagtttcttcaccccccggaagccagcaatc
aaaaaagaagtaaaagaagaggagtctgttaccccaagaaaggaggagcccaagggcccc
ctggacccctgcagctacaaccctgccaagaacaactaccatcctgtggaagacgcctgc
tgggggccgggccagaaggtcccttatttggctgtggcccggacctttgagaagatcgag
gaggtttctgctcggctccggatggtggagacactgagcaacttgctgcgctctgtggtg
gccctgtcacctccagaccttctccccatcatctaccttagcctcaaccaccttgggccg
ccccagcagggcctggagcttggcgtcggggacggcatccttctcaaggcggtggcccag
gccacaggtcggcagctcgagtctgtccgggctgaggcagccgagaagggcgacgtgggg
ctggtggccgagaacagccgcagcacccagaggctcatgctgcccccgcccgccctcacc
gcctctggggtcttcaccaaattccgagacatcgcccggctcactggcagtgcttccaca
accaggaagatggacatcatcaaaggcctcttcgttgcctgccgccactcagaagcccgg
ttcattgccagagccctgagtggacggctgcgcctcgggctggcagagcagtcagtgctg
gccgccctcgcccaggccgtgagcctcacacccccaggccaagagttccccccggccgtg
gtggatgcagggaagggcaagacagcagaggccagaaagacgtggctggaggaacaaggc
atgatcctgaagcagacgttctgtgaggtgcctgacctggaccggattgtccctgtgctg
ctgcagcacagcctggagcggctcccggagcactgccggctgagtccaggggtccccctg
aagccaatgttggcccacccgaccaggggcgtcagcgaggtcctgaaacgcttcgaggag
gcagctttcacctgcgagtacaaatacgatgggcagagggcacagatccatgttttagaa
ggcggggaggtgaagatcttcagcaggaatcaggaagacaatactggaaagtaccccgac
gtcatcagccgcatccccaagattaaacttccgtcagtcacatcctttatcctggacacg
gaagccgtggcttgggaccgggaaaagaagcagatccagccattccaagtgctcaccacc
cgcaaacgcaaggaggtggatgcagccgagatccaggtgcaggtgtgtttgtatgccttc
gacctcatctacctcaatggagagtctttggtacgtgagcccctttcccgacgccggcag
ctgctccgggagaacttcgtggagacagagggcgagtttgtcttcgccacctccctggac
accaaggacatggaccagattgccgagtttttggagcagtccgtgagagattcctgcgag
gggctcatggtgaaaaccctggatgtggatgccacctacgagatcgccaagaggtcacac
aactggctcaagctgaagaaggactacctggagggtgtgggcgacaccctggacctcgtg
gtgatcggcgcctacctgggccgcggaaagcgagctggccgctatgggggcttcctgctg
gcctcttacgacgaggaaagtgaggagctgcaggccatttgcaagcttggaactggcttc
agtgacgaggagctggaggaacatcaccagagcctgcaggccttggtgctgcccagccca
cgctcctacgtccgggcggatggcgccgtggcccccgaccactggctggagcccagcgcc
gtgtgggaggtcaagtgcgccgacctctccctcntccccatctaccctgctgcccggggc
ctggtggacagtgagaaggggatctcccttcgctttcctcggtttattcgcatccgtgag
gacaagaagccggaggaggccaccaccagtgcccaggtggcctatcttgtacaggaagca
aagtcagattcagaagcagcacagtgcagactccgactccgacccggagggtttttctac
tag
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integrated database retrieval system
