Rhinolophus ferrumequinum (greater horseshoe bat): 117037535
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Entry
117037535 CDS
T07722
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
rfq
Rhinolophus ferrumequinum (greater horseshoe bat)
Pathway
rfq03013
Nucleocytoplasmic transport
rfq03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
rfq00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
117037535 (UPF1)
03015 mRNA surveillance pathway
117037535 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rfq03019
]
117037535 (UPF1)
Enzymes [BR:
rfq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
117037535 (UPF1)
5.6.2.5 RNA 5'-3' helicase
117037535 (UPF1)
Messenger RNA biogenesis [BR:
rfq03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
117037535 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
117037535 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
nSTAND3
Helicase_RecD
DEAD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
117037535
NCBI-ProteinID:
XP_032989522
Ensembl:
ENSRFEG00010020838
LinkDB
All DBs
Position
18:51450609..51484353
Genome browser
AA seq
1130 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGGPGGPGGGGSG
GPVGAGPGAAGGQLDAQVGGPEGILQNGAVDDSVAKTSQLLAELNFEEDEEDTYYTKDLP
AHACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGET
VLECYNCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFL
SWLVKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDA
YQYQNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSGNEDLVI
IWLRDMRLMQGDEICLRYKGDLAPLWKGIGHVIKVPDNYGDEIAIELRSSVGAPVEVTHN
FQVDFVWKSTSFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGL
PDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVD
QLTEKIHQTGLKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELS
SADEKRYRALKRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMV
PVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPAL
SAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRT
EAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDA
FQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHL
LNYYKEQKVLVEGPLNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVYD
RSSQGRPSNMYFQTHDQLGMISAGPSHVAAMNIPIPFNLVMPPMPPPGYFGQANGPAAGR
GTPKGKTGRGGRQKNRFGLPGPNQTNLPSSQASQDVASQPFSQGALTQGYISMSQPSQMS
QPGLSQPELSQDSYLGDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3393 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtggaggcgtacggccccagctcgcagacgctcaccttcctggacaccgaggag
gccgagctgctcggcgctgacacgcagggctccgagttcgagttcaccgacttcactctt
cccagccagacgcagacgccccccggcggccccggcggtcccggaggtggcggctcgggg
ggcccggtcggcgcgggacctggcgctgcgggcggacagctcgacgctcaggtgggagga
cctgagggcatcttgcagaacggcgccgtggacgacagtgtggccaagaccagccagttg
ttggccgagctgaacttcgaagaagacgaggaggacacgtactacacgaaggacctccca
gcgcacgcctgcagttactgcggaatacacgatcctgcttgcgtggtttactgtaatacc
agcaaaaagtggttctgtaacggacgtggaaatacttctggcagccacattgtaaatcac
cttgtgagggcaaaatgcaaagaggtgactctgcacaaggatgggcctctgggggagacg
gtcctggagtgttacaactgtggctgccggaacgtcttcctcctcggcttcatccccgcc
aaggccgactcggtggttgtgctgctgtgccggcagccctgcgctagtcagagcagcctc
aaggacatcaactgggacagctcgcagtggcagcccctgatccaggaccgctgcttcctg
tcctggctggtcaagatcccttcagagcaggagcagctgcgcgctcggcaaatcaccgcc
cagcagatcaacaagctggaggagttgtggaaggagaatccttctgccaccttggaggac
ctggagaagccaggggtggatgaagagccccagcacgtcctcctgcggtacgaggatgcc
taccagtaccagaacatattcgggcctctggtcaagctggaggctgactacgacaagaag
ctgaaagagtcccagactcaagataacatcacggtcaggtgggacctgggccttaacaag
aagagaatcgcctacttcactttgcccaagactgactctggtaatgaggatttagtcata
atttggttaagagacatgcggctcatgcagggcgacgagatatgcctgcggtacaagggc
gacttggcgcccctgtggaaagggatcggccacgtcatcaaggtccctgataattatggc
gatgagatcgccattgagctgcggagcagtgtgggtgcgcctgtggaggtgacgcataac
ttccaggtggatttcgtgtggaagtccacctcgtttgacaggatgcagagcgcactgaag
acctttgccgtggatgagacctccgtgtcgggttacatctaccataagctgctcggccac
gaggtggaggacgtgatcatcaagtgccagctacccaagcgcttcacggcacaggggctg
cccgacctcaaccactctcaggtttatgccgtgaagactgtgctgcagagaccgctgagc
ctgatccagggaccgccaggcacggggaagacagtgacctcggccaccattgtctaccac
ctggcgcggcaaggcaatgggcctgtgctcgtctgtgctccaagtaacatagctgtggat
cagctgaccgagaagatccaccagacggggctgaaagtggtgcggctctgtgcgaagagc
cgcgaggccatcgactcgccggtgtcgttcctggccctgcacaaccagatcaggaatatg
gacagcatgccagagctccagaagctgcagcagctgaaggacgagaccggagagctgtca
tctgctgatgagaagcggtaccgggccctgaagcgcacggctgaaagggagctgctcatg
aacgcagacgtgatctgctgcacgtgtgtgggcgcgggagaccccaggctcgccaagatg
cagttccgctccattctaatcgacgagagcacccaggccactgagccggagtgcatggtc
cctgtggtcctcggagccaagcagctgatccttgtgggtgaccactgccagctgggcccc
gtggtgatgtgcaagaaggcggccaaggctgggctgtcccagtcgctgtttgagcgcctg
gtggtgctgggcatccgtccaatccgcctgcaggtccagtatcggatgcaccctgcactc
agcgcctttccttccaacatcttctatgagggttctctgcagaacggagtcactgcagcg
gatcgtgtgaagaaagggtttgacttccagtggccccaacctgataagccgatgttcttc
tacgtgacccagggccaggaggagatcgccagctcgggtacctcctacctgaacaggacg
gaggctgcaaacgtggagaagatcaccacgaagctgttgaaggcgggcgccaagccagac
cagattggcatcatcacaccctacgagggccagcgctcctacctggtgcagtacatgcag
ttcagcggctccctgcacaccaagctctaccaggaggtggaaatcgccagtgtggatgcg
ttccaggggcgcgagaaagacttcatcatcctctcctgcgtgcgggccaacgagcaccaa
ggcatcgggtttttaaacgaccccaggcggcttaacgtggccctgacccgagcacgatac
ggggtcatcattgtgggcaacccgaaagcactgtccaagcagccactctggaaccacctg
ctgaactactacaaggagcagaaggtgctggtggaggggcccctgaacaacctgcgggag
agcctcatgcagttcagcaagccccggaagctggtcaacaccatcaaccctggagcccgc
ttcatgaccacagccatgtatgatgcccgggaggcgatcatcccaggctccgtgtacgat
cggagcagccagggccggccctccaacatgtacttccagacccatgaccagctcggcatg
atcagcgcggggcccagccacgtggctgccatgaacatcccgatccccttcaacctggtc
atgccgcccatgccccccccagggtactttgggcaggctaacgggccggctgcaggccgg
ggcactccaaaaggcaagacgggtcgtggcggacgccagaagaatcgctttgggcttcct
gggcccaaccagaccaacctacccagcagccaggccagccaggacgtggcgtcccagcct
ttctcgcagggcgccctgacccagggctacatctccatgagccagccttcccagatgagc
cagcccggcctctcccagcctgagctgtcccaggacagttatcttggcgatgagtttaag
tcccagatcgatgttgcgctgtcacaagattccacataccagggggagagggcctaccag
cacggcggagtcacggggctgtcccagtactag
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integrated database retrieval system
