Rhodoferax ferrireducens: Rfer_1331
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Entry
Rfer_1331 CDS
T00334
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
rfr
Rhodoferax ferrireducens
Pathway
rfr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rfr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Rfer_1331
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rfr03400
]
Rfer_1331
Enzymes [BR:
rfr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Rfer_1331
DNA repair and recombination proteins [BR:
rfr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Rfer_1331
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
Glyco_tran_WecG
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
ABD69065
UniProt:
Q21YT8
LinkDB
All DBs
Position
complement(1430013..1433540)
Genome browser
AA seq
1175 aa
AA seq
DB search
MSRIGALATTCPAFMELPKLIPGKRFTLPRPVGSADALLLAQLGLREKSQHKVTAIITAD
ALDAQRLIDEMAFFAPELRCVLFPDWETLPYDTFSPHQDLISERLATLWRISQRNKETGA
DVVLVPATTALYRLAPPSFLAGYTFHFKVKQKLDEAKLKAQLTLAGYSHVTQVVSPGEYA
VRGGLIDLFPMGSAVPYRVDLFDDEIDSIRTFDPDSQRSLYPVPEVRLLPGREFPMDDEA
RARFRNRWRELLEGDPTRSRIYKDIGNGVATAGIEYYLPLFFDDTATVFDYLGEAATVVL
HGDLEPAFAHFWQDTRERYRLVQGDPERPVLPPGALFLSTEQFYERVNQHAQLALRPALD
TASAYAEFEALPPLSVVRGAEDPLARLKAHIRNTQQRTLVLAESEGRRASLLDFLHSSQF
DPPAFDSLAEFERSDEPIGIATSSLSAGFGWLEAGIDFVTETELFAAGPTTRRRKKQEQV
SDVEALIKDLSELNIGDPVVHSAHGIGRYRGLINLDLGNRLANGEPEVQEFLHLEYADKA
TLYVPVSQLQLISRYTGVAADEAPLHKLGSGQWDKAKRKAAEQVRDSAAELLNIYARRAL
REGHAFRYSAGDYEIFANDFGFEETADQSAAIHAVIQDMISPRPMDRLICGDVGFGKTEV
ALRAAFIAITGGKQVAFLAPTTLLAEQHYQTLVDRFSKWPVKVAEMSRFRSAKEITAAMK
GIADGTIDIVVGTHKLLSKDTHFKDLGLLIIDEEHRFGVRHKEQMKALRAEVDVLTLTAT
PIPRTLGMALEGLRDLSVIATAPQRRLAIKTFVRTEGAGVIREAVLRELKRGGQVYFLHN
EVETIENRRAKLEELLPEARIAVAHGQMPERQLEAVMRDFVAQRFNLLLCSTIIETGIDV
PTANTIVMARADKFGLAQLHQLRGRVGRSHHQAYAYLMVPDLEGLTKQAQQRLDAIQQME
ELGSGFYLAMHDLEIRGAGEVLGENQSGNMLEVGFQLYNEMLSEAVRCLKAGIEPDLLSP
LNVSTDINLHAPALLPNDFCGDVHLRLSFYKKLATANNTNQIDALLEELVDRFGKLPNQA
QTLIDVHRLRVLAKPFGVVKVDAAPGVITITFKKNPPIDPMKIIAMIQKNKHIKLAGNEK
LRIERELPEAKDRAQMVRDVLRNLGQPVAPVATIA
NT seq
3528 nt
NT seq
+upstream
nt +downstream
nt
ttgtcacgcattggcgctttagccaccacctgccctgcattcatggaattacccaaactc
atccccggcaagcgcttcaccctgccgcgcccggtcggctcagccgatgcgctcttactg
gcccaactggggctgcgcgagaagagccagcacaaggtcacggccatcatcacggccgat
gccctggacgcgcagcgcctgatcgacgaaatggcgttctttgcgcccgagctgcgttgc
gttctgtttccggattgggagactttgccctacgacaccttttcaccgcaccaggacctg
atcagcgagcgcctggccaccttgtggcgcatcagccagcgcaacaaagaaaccggcgcc
gatgtcgtgctggtgcccgccaccaccgcgctctaccggctggcacccccgtcttttctg
gccggctatacctttcacttcaaggtcaaacaaaaactcgacgaagccaaactcaaggcc
caattgacgctggccggctacagccacgtgacgcaagtggtgagcccgggcgaatacgcg
gtgcgcggcggcctgatcgacctgtttccgatgggcagcgccgtgccctaccgcgttgat
ttgtttgacgacgagatcgacagcatccgcacctttgaccccgacagccagcgcagcctg
taccccgtgcccgaggtgcgcctgctgcccgggcgcgagttcccgatggacgacgaggcg
cgcgcgcgctttcgcaaccgctggcgtgagttgctggagggcgacccgacccgcagccgc
atctacaaagacatcggcaacggcgttgccaccgccggcattgagtactacctgccgctg
ttttttgacgacaccgccacggtgtttgactatttgggtgaggctgccacggtggtgctg
cacggcgacctggagcccgcctttgcccacttctggcaagacacgcgcgagcgctaccgg
ctggtgcaaggcgacccggagcgcccggtgctgccaccgggagccctgtttttaagcacc
gagcagttctacgagcgggtcaaccagcatgcgcaactggccttgcggcccgccctggac
actgccagcgcctacgccgagtttgaggcgctgccgcccttgagcgtggtgcgcggcgcc
gaagacccgctggcccgcctgaaggcccacatccgaaacacccagcagcgcaccctggtg
ctggccgaaagcgagggccggcgcgccagtctgctggacttcttgcacagcagccagttc
gacccgccggcgtttgactcgctggcggaattcgagcgcagtgatgagccgatcggcatc
gccacctccagcctgagcgcgggctttggctggctggaagcgggcatcgacttcgtcacc
gaaaccgaactctttgccgccggcccgaccacgcgacggcgcaaaaaacaggaacaggtc
agtgacgtcgaagccctgatcaaagacctgagcgagctcaacatcggcgacccggtggtg
cactcggcccacggcattggccgctaccgcggcctgatcaacctggacctgggcaacaga
ttagccaatggcgagcccgaggtgcaggagttcttgcacctggaatatgccgacaaggcc
acgctctatgtgccggtcagccagttgcagctcatcagccgctacaccggcgtggccgcg
gacgaagcgccgctgcacaaactgggctccggccagtgggacaaggccaagcgcaaagcg
gccgaacaggtgcgcgactcggccgccgagctgctcaacatctatgcccggcgcgccctg
cgcgaaggccatgccttccggtactcggccggcgactacgaaatctttgccaacgacttc
ggctttgaagaaaccgccgaccagagtgctgccattcacgccgtgattcaggacatgatc
agcccgcgcccgatggaccggctgatctgcggcgatgtcggctttggcaagaccgaggtc
gccctgcgcgccgccttcattgccatcaccggcggcaagcaggtggcttttctggcaccg
accacgctgctggccgaacagcactaccagacgctggtcgaccgcttcagcaaatggccg
gtcaaagtggccgagatgagccgcttccgctcggccaaggaaatcaccgccgccatgaaa
ggcattgccgacggcaccatcgacatcgtggtcggcacccacaagctgctgagcaaagac
acccatttcaaagacctgggcctgctcatcatcgacgaggagcaccgttttggcgtgcgc
cacaaagagcagatgaaagcgctgcgcgccgaggtcgatgtgctcacgctcacggccacc
ccgatcccgcgtacgctgggcatggcgctggaaggtctgcgcgacctgagcgtgattgcc
accgcgccgcaacgccgcctggccatcaaaacctttgtgcgcacggaaggcgcaggcgtg
atccgtgaggccgtactgcgcgaactcaagcgcggcggccaggtttacttcttgcacaac
gaggtcgaaacgatcgaaaaccgccgcgccaagctggaggaactgctgcccgaagcgcgc
attgccgtggcgcacggtcagatgccggagcgccagctggaggccgtgatgcgcgacttt
gtggcccagcgcttcaacctgctgctgtgttccaccatcatcgaaaccggcattgacgtg
ccgactgccaacaccatcgtgatggcgcgcgccgacaaatttggcctggcgcagttgcac
cagttgcgcggccgcgtcggtcgcagccaccaccaggcctacgcctacctgatggtgccc
gacctggagggcctgaccaagcaggcgcaacaacggctggacgccatccagcaaatggaa
gaactgggcagcggcttctacctggccatgcacgacctggagattcgcggtgccggcgag
gtgctgggggaaaaccagagcggcaacatgctggaagtcggctttcagctctacaacgag
atgttgagtgaagcggtgcgctgcctcaaggccggtattgagcccgatttgctcagcccg
ctcaacgtcagcaccgacatcaatctgcacgccccggcgctcttgccgaatgatttttgt
ggcgacgtgcacctgcgcctctcgttctacaaaaagctggccaccgcgaacaataccaac
cagattgatgcgctgctggaagaactggtggaccgcttcggcaaactcccaaaccaggcg
cagaccctgatcgacgtccaccgcttgcgcgttctggccaaaccgtttggtgtggtcaag
gtcgatgccgcccccggcgtgatcaccatcaccttcaagaaaaacccgccgattgatccg
atgaagatcattgcgatgatccagaagaacaagcacatcaaactggcgggtaatgagaag
ctgcgcatcgagcgggaactgcctgaagccaaagaccgggcgcagatggtgcgcgatgtg
ctgcgtaatttggggcagccggtggcgcctgttgcgacaatcgcatag
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