Rhodoferax ferrireducens: Rfer_3591
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Entry
Rfer_3591 CDS
T00334
Name
(GenBank) DNA-directed RNA polymerase, subunit beta-prime
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
rfr
Rhodoferax ferrireducens
Pathway
rfr03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rfr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Rfer_3591
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rfr03021
]
Rfer_3591
03400 DNA repair and recombination proteins [BR:
rfr03400
]
Rfer_3591
Enzymes [BR:
rfr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Rfer_3591
Transcription machinery [BR:
rfr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Rfer_3591
DNA repair and recombination proteins [BR:
rfr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Rfer_3591
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
ApbA_C
Biotin_lipoyl_2
Motif
Other DBs
NCBI-ProteinID:
ABD71295
UniProt:
Q21SF8
LinkDB
All DBs
Position
complement(3997240..4001457)
Genome browser
AA seq
1405 aa
AA seq
DB search
MKSLLDLFKQFTPDEHFNAIKIGMASPEKIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIDLAAPCAHIWFLKSL
PSRLGLVLDMTLRDIERVLYFEAYVVTDPGMTPLKKFSIMSEDDFDAKFKEYGDEFQAKM
GAEGIKDLLQSLDIDGSIERLRNDPTGSELKIKKNTKRLKLLEAFKKSGIKPEWMVLEVL
PVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNSRLRRLLELKAPEIIARNEKRMLQEA
VDSLLDNGRRGKAMTGANKRALKSLADMIKGKSGRFRQNLLGKRVDYSGRSVIVVGPTLK
LHQCGLPKLMALELFKPFIFARLEAMGIATTIKAAKKEVESGTPVVWDILEEVIKEHPVM
LNRAPTLHRLGIQAFEPILIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSVEAQVECRT
LMLASNNVLFPSNGEPSIVPSQDVVLGLYYTTRERINGKGEGLIFADVGEVQRAFDGGAV
ELNSRINVRLTEYIKDKQTGELVPSTKLWETTAGRALLSEILPKGLPFENVNKALKKKEI
SKLINVSFRKCGLKETVVFADKLLQYGFRLATKAGISICLDDMLVPTEKPGIIEQAEQEV
KEIAQQYTSGLVTSGERYNKVVDIWGKAGDEVSKVMMAQLSKEIVTDRHGQQVQQESFNS
IYMMADSGARGSPAQIRQVAGMRGLMAKPDGSIIETPITANFREGLNVLEYFISTHGARK
GLADTALKTANSGYLTRRLVDVTQDLVVTEQDCGTHSGYLMRAIVEGGEVIESLRDRILG
RTAADDVLHPENRSVLAPAGTMLDEDQIDELEVAGVDEVKVRTALTCETRFGICAKCYGR
DLGRGGLVNGGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAIASSVEAKSNGNIGFN
ATMRYVTNGKKELVVISRSGEIVIHDEHGRERERHKVPYGAVLAVKADQTIKSGAILANW
DPLTRPIITEFAGKAHFENVEEGLTVAKQVDEVTGLSTMVVIDPKHRGSAKVIRPIVKLI
DASGNEVKIPGTDHSVTIGFPIGALVQVRDGQDVSPGEVLARIPIEGQKTRDITGGLPRV
AELFEARSPKDKGVLAEMTGTVSFGKETKGKIRLQITDPDGAVWEDLVPKEKNIIVHEGQ
VVNKGESVVDGPADPQDILRLLGSEELARYIVDEVQDVYRLQGVKINDKHIEVIVRQMLR
RVVVENAGDSTYINGEQVERSEILNTNDALRADGKIPARFTNLLLGITKASLSTDSFISA
ASFQETTRVLTEAAIMGKRDELRGLKENVIVGRLIPAGTGMAYHEARKVRENMDDTERRA
IAEAEAAELAGQAEATEANEGAAAE
NT seq
4218 nt
NT seq
+upstream
nt +downstream
nt
atgaaatcattactcgacctgttcaagcagttcacgccggatgagcatttcaatgccatc
aagattggcatggcttctcccgagaagatccgttcgtggtcgttcggcgaagtcaaaaag
ccggaaaccatcaactaccgcaccttcaagcccgagcgggatggtctgttttgcgccaag
attttcggacccatcaaggactacgaatgcttgtgcggcaagtacaagcgcctcaagcac
cgtggcgtgatctgtgaaaagtgcggcgttgaagtgacccagaccaaagtgcgtcgcgag
cgcatgggccacatcgacctggcggcaccttgtgcccatatctggttcctgaaatcgctg
ccgtcgcgtctgggcctggtgctcgacatgaccttgcgtgacatcgaacgcgtgctgtat
tttgaagcctatgttgtgaccgatccgggcatgacgccgctgaaaaaattcagcatcatg
tccgaagatgactttgacgccaaattcaaggaatatggcgacgagtttcaggccaagatg
ggcgctgagggcattaaagatttgcttcagagccttgatattgatggttcgatcgagcgg
ctgcgtaacgaccccacgggctccgagctgaagatcaagaagaacaccaagcgactcaaa
ttgcttgaagcgttcaaaaaatccggcatcaagccggagtggatggtgctcgaagtgttg
cccgtgttgccaccggacttgcgtcccctggtgccgctggacggtggccgtttcgccacc
tccgatctgaacgacttgtatcgtcgcgtgatcaaccgcaacagccgtctgcgtcgtttg
cttgaattgaaggcgcccgagatcattgcccgcaatgaaaagcgcatgctgcaagaagcc
gtggattcgctgctcgacaacggccgtcgcggcaaagccatgaccggcgccaacaagcgt
gccctcaagtcgctggccgacatgatcaaaggcaaatcgggacgtttccgtcagaatttg
ctcggtaaacgggtcgattactcgggtcgttccgtgattgtggtgggccccacgctcaaa
ctccatcagtgcggcttgcccaagctgatggcgcttgaattgttcaagcctttcatcttc
gcgcgcctggaagccatgggcattgcgaccaccatcaaggcggccaagaaggaagttgaa
tccggcaccccggtggtgtgggacatcctggaagaggtgatcaaagagcaccctgtgatg
ctgaaccgtgcgccaaccctgcaccgtttgggcattcaggcgtttgagcccatcttgatt
gaaggcaaggcgattcaactgcacccgctggtttgcgctgcattcaatgccgactttgac
ggtgaccagatggcggttcacgtgccgttgtcggtggaagcgcaagtggaatgccgcacg
ttgatgcttgcgtccaacaatgtgctgttcccgtccaacggcgagccgtcgattgtgccc
tcgcaagacgtggtgctgggcttgtattacacaacccgggagcgtatcaatggcaagggt
gagggcctgattttcgccgacgtcggtgaagtgcagcgcgcgttcgatggcggtgcggtg
gaactgaactcccgtatcaatgtgcggctgaccgagtacatcaaggacaagcagaccggc
gaattggtgccttcgaccaagctgtgggaaaccaccgcaggacgcgccttgttgtcggaa
attttgcccaagggcctgccttttgaaaacgtgaacaaggcgctgaagaagaaagaaatt
tccaagctgatcaatgtgtcgttccgcaaatgcggtctcaaagagaccgtggtgtttgcc
gacaagttgctgcaatatggtttccggctggccaccaaggccggtatctcgatctgtctt
gatgatatgttggtgccgaccgaaaagccgggcatcattgagcaagccgagcaagaggtc
aaggaaattgcgcagcagtacacctcgggtctggtgacttcaggcgagcgctataacaag
gtggtggacatctggggcaaggccggcgacgaggtgtccaaggtcatgatggctcagttg
tccaaggaaattgtcacggatcgtcatggccagcaggtacagcaggagtcctttaactcc
atctacatgatggcggattccggtgcgcgcggttcgccagcgcagattcgtcaggtggcc
ggcatgcggggcctgatggccaagcccgacggctccatcattgagacgccgatcaccgcg
aacttccgcgagggcctgaacgtgctggaatactttatttccacccacggcgcacgaaaa
ggtcttgccgacacggccttgaagacagccaactcgggttacctgacgcgtcgtctggtc
gatgtgacgcaggatctggtcgtgaccgaacaggactgtggcacgcacagcggttacctg
atgcgcgccatcgtcgaaggcggtgaagtcatagagtcgttgcgtgatcgtattctgggt
cgtacggcggccgatgatgtgttgcatccggagaatcgttccgtgctggctccggccggc
acgatgctcgacgaagaccagatcgatgagcttgaggtggcgggcgtcgatgaagtcaaa
gtgcgcacggcgctgacttgcgagactcgttttggtatttgcgccaaatgctacggccgc
gatctgggtcggggcggcttggtcaacgggggcgaagcggtgggtgtgattgccgcgcaa
tccatcggtgagcccggtacgcagttgaccatgcgtaccttccacattggcggggccgcc
tcgcgtgcggccatcgcgtccagcgtggaagccaagtccaacggcaacatcggcttcaac
gccacgatgcgttatgtgacgaatggcaaaaaggaattggtggtgatttcccgttccggc
gagatcgtcatccatgacgagcatggccgtgagcgtgaacgtcacaaggtgccgtatggc
gccgtgttggccgtgaaagcggatcagaccatcaagtcgggcgcgatcctggccaattgg
gatcctttgacgcgaccgatcattaccgagtttgcgggtaaggcccatttcgaaaatgtc
gaagaaggcctgacggtggccaaacaggtggacgaggtgaccggtttgtccaccatggtg
gtgatcgatccgaaacaccgcggttcggccaaggtcatccgtccgatcgtcaagttgatt
gatgcgagcggcaacgaggtcaagattcccggcaccgaccattccgtgaccatcggcttc
ccgattggtgcgctggttcaggtgcgcgacggtcaggatgtgagcccaggcgaagtgctg
gcacggattcctatcgagggccaaaaaacccgcgatattaccggcggcttgccgcgggtt
gccgagctgtttgaagcccggtcgcccaaagacaagggcgttttggctgaaatgacggga
accgtgtcttttggcaaggaaaccaaaggcaagattcgcctgcagatcaccgatccggat
ggcgctgtctgggaagacttggtgcccaaggagaaaaacatcatcgtgcacgaaggccag
gtcgtcaacaagggcgaaagcgtggtcgatggtccggctgatccgcaggacatcttgcga
ttgctcggctccgaggaactggcacgctacattgttgacgaggtgcaggacgtgtaccgt
ttgcagggtgtgaagatcaatgacaagcacatcgaagtgattgttcgccagatgttgcgc
cgggtcgtggtcgagaatgctggtgactccacctatatcaacggagagcaagtggagcgc
tcggaaattctcaataccaatgacgccttgcgcgccgacggcaagattccagcgcgcttt
accaatctgctgctgggtattaccaaggcatccttgtcgaccgacagtttcatcagtgcg
gcatccttccaggaaaccacgcgggtgctgactgaagcggccatcatgggtaagcgcgac
gaattgcgcggcttgaaagaaaacgtcattgtgggtcgactgattcctgccggtaccggc
atggcttatcacgaagcccgcaaggttcgcgagaacatggacgacactgagcgccgggcc
attgccgaggcagaagccgccgaactggcgggtcaggcagaggcaacggaagccaatgaa
ggagcagcagccgagtaa
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