KEGG   Rathayibacter festucae: C1I64_14985
Entry
C1I64_14985       CDS       T06173                                 
Name
(GenBank) ATP-dependent DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
rfs  Rathayibacter festucae
Pathway
rfs03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:rfs00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    C1I64_14985
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:rfs03400]
    C1I64_14985
Enzymes [BR:rfs01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     C1I64_14985
DNA repair and recombination proteins [BR:rfs03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     C1I64_14985
SSDB
Motif
Pfam: LigD_Prim-Pol DNA_ligase_A_M LigD_N DNA_ligase_A_C RNA_ligase DNA_ligase_OB_2 DNA_primase_S
Other DBs
NCBI-ProteinID: AZZ53210
UniProt: A0A3Q9UY27
LinkDB
Position
3269853..3272423
AA seq 856 aa
MTPSSQQLVSVGGRRLRLTNLDKVVYPEAEFTKADVLSYYASVASAMLPHLARRPVTRKR
WVDGVGTAEEPGEVFFEKNLPSSAPYWLSRTKLAHSSRDVEYPLVDDVAGLTWLAQQAAL
ELHVPQWRVGSDGERRPPDRLVLDLDPGEGAGLAECAEVAFLARDLLEGMGLEPFPVTSG
SKGIHLYCPLDASASSDQISSVAHELAKVLESDHRDLVVSDMKKTLREGKVLVDWSQNSA
AKTTIAPYSLRGRLLPRVAAPRTWEEIGAADLRHLAPDEVVERLRSDGDLLRPVLAARGA
ELEPSPERMAGFAATDASADRLAAYRSMRDASKTPEPVPSPGAGIATSGDTFVVQEHHAR
RLHYDFRLEHDGVLVSWAVPKGPPLDGDPNRLAVQTEDHPLEYATFEGTIPAGEYGGGEV
RIWDEGTYALEKWREGEEVIAVLTGRPDGGLGGEPRRYALLHTGAKGGKGDEKNWLLHLM
APGAAAHGGQSHGGTAHGRGVGVRKGGGSGGASGSGAPAPSAAASTGSGVSGSSAAAPIT
AAAAFRPMLATAGRAADIPGDSAIEMKWDGYRALVRVAGGAVTLTSRNGNDLTAAFPDLL
GPIAEAAAVDCVLDGEIVALDDRGRPDFGRLQTRGGLTKPREIEAAARATPVHLMLFDLL
AIDGTEAVGRPYDERRAALEQLATENERVHVPSVFDGDLEEAMSTSLALGLEGVVAKRRD
AAYRPGVRSGDWVKLTHHRVQEVVIVGWREGEGGLVGSVGSLLTALPGDDGLVYSGRVGS
GFSDRERRGLVDRLAEHATDEPAVSVPPAESRGVHWVEPVLVGEVRYRERTAGGTLRQPV
WRGWRADKSAAEVRLE
NT seq 2571 nt   +upstreamnt  +downstreamnt
atgaccccctcctcgcagcagctcgtgtcggtgggtgggcggcgcctgcggctgaccaac
ctcgacaaggtggtctatccggaggcggagttcaccaaggccgacgtcctctcctactac
gcgtcggtcgcctccgcgatgctgccgcacctcgcccggcggccggtgacgcgcaagcgc
tgggtcgacggcgtcggcacggcggaggagcccggcgaggtcttcttcgagaagaacctg
ccctcctccgcgccctactggctcagccggacgaagctcgcgcactcctcgcgcgacgtc
gagtacccgctcgtcgacgacgtcgccgggctgacctggctggcccagcaggccgcgctc
gagctgcacgtgccgcagtggcgggtcggctccgacggcgagcggcgcccgccggaccgg
ctcgtgctcgacctcgaccccggtgagggggcggggctggcggagtgcgccgaggtggcg
ttcctggcgcgggacctgctggaggggatggggctcgagccgttcccggtgaccagcggc
agcaagggcatccacctgtactgcccgctggacgcctccgcctcgagcgatcagatctcc
tcggtcgctcacgagctggcgaaggtgctggagtccgaccaccgcgatctggtcgtctcc
gacatgaagaagaccctgcgcgagggcaaggtgctcgtcgactggagccagaacagcgct
gcgaagacgacgatcgcgccgtactcgctgcggggacggctgctgccgcgggtcgccgcg
ccgcgcacgtgggaggagatcggggcggcggacctgcggcacctcgccccggacgaggtg
gtcgagcggctgcggagcgacggcgacctgctgcgcccggtgctggccgcgcgcggcgcg
gagctcgagccgtcgccggagcggatggccggcttcgcggcgaccgacgcctccgccgac
cggctggccgcctaccggagcatgcgcgacgcctcgaagacgccggagccggtgccgtcg
ccgggggcggggatcgcgacgtcgggcgacaccttcgtcgtgcaggagcaccatgcgcga
cgcctgcactacgacttccggctggagcacgacggcgtcctggtcagctgggccgtgccg
aaggggccgccgctggacggcgacccgaaccggctggcggtgcagacggaggaccacccg
ctcgagtacgcgaccttcgagggcacgatccccgcgggcgagtacggcggtggcgaggtg
cggatctgggacgagggcacctacgcgctggagaagtggcgcgagggcgaggaggtgatc
gcggtgctgaccggccggccggacggcgggctcggcggcgagccgcgccggtatgcgctg
ctgcacaccggggcgaagggcggcaagggggacgagaagaactggctgctgcacctgatg
gcgcccggggccgcggcgcacgggggacagtcacacggggggacggcgcacgggcgcggt
gtcggggtgcggaagggcggggggtccggcggggcgtcggggtccggagcgccggcgccg
tccgccgccgcatcgaccggttccggagtgtcggggtcctccgcggccgcgccgatcacg
gcggccgccgccttccggccgatgctcgccaccgccggccgcgcggcggacatccccggg
gattccgcgatcgagatgaagtgggacggctaccgcgccctggtgcgggtggcgggcgga
gcagtgaccctgaccagccggaacggcaacgacctgacggccgcgttccccgatctgctc
ggtccgatcgccgaggcggcggcggtcgactgcgtgctcgacggcgagatcgtcgcgctc
gacgaccgcggccggcccgacttcggccggctgcagacccgcggcgggctgaccaagccg
cgcgagatcgaggcggcggcgcgcgcgactccggtgcatctgatgctcttcgacctgctg
gcgatcgacggaacggaggccgtcggccgcccctacgacgagcgccgcgcggctctggag
cagctggcgaccgagaacgagcgggtgcacgtgccgtcggtcttcgacggcgacctggag
gaggcgatgtcgacgagcctcgcgctcggcctggagggcgtggtcgccaagcgccgggac
gcggcgtaccggccgggcgtccgctccggcgactgggtgaagctcacccaccaccgcgtg
caggaggtggtgatcgtcggctggcgcgagggcgagggcggcctggtgggctcggtcggc
tcgctgctgaccgcactccccggcgacgacggcctggtctactccggccgggtgggcagc
ggcttcagcgaccgagagcgccgcggcctcgtcgaccgcctcgccgagcacgccaccgac
gagcccgcagtgtccgtcccgcccgccgagtcccgcggcgtgcactgggtcgagccggtc
ctggtcggcgaggtccgctaccgcgagcgcaccgccggcggcaccctccgccagcccgtc
tggcgcggctggcgcgccgacaagtccgcggcggaggtgcgcctggagtga

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