Rathayibacter festucae: C1I64_14985
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Entry
C1I64_14985 CDS
T06173
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
rfs
Rathayibacter festucae
Pathway
rfs03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
rfs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
C1I64_14985
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rfs03400
]
C1I64_14985
Enzymes [BR:
rfs01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
C1I64_14985
DNA repair and recombination proteins [BR:
rfs03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
C1I64_14985
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
LigD_N
DNA_ligase_A_C
RNA_ligase
DNA_ligase_OB_2
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
AZZ53210
UniProt:
A0A3Q9UY27
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Position
3269853..3272423
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AA seq
856 aa
AA seq
DB search
MTPSSQQLVSVGGRRLRLTNLDKVVYPEAEFTKADVLSYYASVASAMLPHLARRPVTRKR
WVDGVGTAEEPGEVFFEKNLPSSAPYWLSRTKLAHSSRDVEYPLVDDVAGLTWLAQQAAL
ELHVPQWRVGSDGERRPPDRLVLDLDPGEGAGLAECAEVAFLARDLLEGMGLEPFPVTSG
SKGIHLYCPLDASASSDQISSVAHELAKVLESDHRDLVVSDMKKTLREGKVLVDWSQNSA
AKTTIAPYSLRGRLLPRVAAPRTWEEIGAADLRHLAPDEVVERLRSDGDLLRPVLAARGA
ELEPSPERMAGFAATDASADRLAAYRSMRDASKTPEPVPSPGAGIATSGDTFVVQEHHAR
RLHYDFRLEHDGVLVSWAVPKGPPLDGDPNRLAVQTEDHPLEYATFEGTIPAGEYGGGEV
RIWDEGTYALEKWREGEEVIAVLTGRPDGGLGGEPRRYALLHTGAKGGKGDEKNWLLHLM
APGAAAHGGQSHGGTAHGRGVGVRKGGGSGGASGSGAPAPSAAASTGSGVSGSSAAAPIT
AAAAFRPMLATAGRAADIPGDSAIEMKWDGYRALVRVAGGAVTLTSRNGNDLTAAFPDLL
GPIAEAAAVDCVLDGEIVALDDRGRPDFGRLQTRGGLTKPREIEAAARATPVHLMLFDLL
AIDGTEAVGRPYDERRAALEQLATENERVHVPSVFDGDLEEAMSTSLALGLEGVVAKRRD
AAYRPGVRSGDWVKLTHHRVQEVVIVGWREGEGGLVGSVGSLLTALPGDDGLVYSGRVGS
GFSDRERRGLVDRLAEHATDEPAVSVPPAESRGVHWVEPVLVGEVRYRERTAGGTLRQPV
WRGWRADKSAAEVRLE
NT seq
2571 nt
NT seq
+upstream
nt +downstream
nt
atgaccccctcctcgcagcagctcgtgtcggtgggtgggcggcgcctgcggctgaccaac
ctcgacaaggtggtctatccggaggcggagttcaccaaggccgacgtcctctcctactac
gcgtcggtcgcctccgcgatgctgccgcacctcgcccggcggccggtgacgcgcaagcgc
tgggtcgacggcgtcggcacggcggaggagcccggcgaggtcttcttcgagaagaacctg
ccctcctccgcgccctactggctcagccggacgaagctcgcgcactcctcgcgcgacgtc
gagtacccgctcgtcgacgacgtcgccgggctgacctggctggcccagcaggccgcgctc
gagctgcacgtgccgcagtggcgggtcggctccgacggcgagcggcgcccgccggaccgg
ctcgtgctcgacctcgaccccggtgagggggcggggctggcggagtgcgccgaggtggcg
ttcctggcgcgggacctgctggaggggatggggctcgagccgttcccggtgaccagcggc
agcaagggcatccacctgtactgcccgctggacgcctccgcctcgagcgatcagatctcc
tcggtcgctcacgagctggcgaaggtgctggagtccgaccaccgcgatctggtcgtctcc
gacatgaagaagaccctgcgcgagggcaaggtgctcgtcgactggagccagaacagcgct
gcgaagacgacgatcgcgccgtactcgctgcggggacggctgctgccgcgggtcgccgcg
ccgcgcacgtgggaggagatcggggcggcggacctgcggcacctcgccccggacgaggtg
gtcgagcggctgcggagcgacggcgacctgctgcgcccggtgctggccgcgcgcggcgcg
gagctcgagccgtcgccggagcggatggccggcttcgcggcgaccgacgcctccgccgac
cggctggccgcctaccggagcatgcgcgacgcctcgaagacgccggagccggtgccgtcg
ccgggggcggggatcgcgacgtcgggcgacaccttcgtcgtgcaggagcaccatgcgcga
cgcctgcactacgacttccggctggagcacgacggcgtcctggtcagctgggccgtgccg
aaggggccgccgctggacggcgacccgaaccggctggcggtgcagacggaggaccacccg
ctcgagtacgcgaccttcgagggcacgatccccgcgggcgagtacggcggtggcgaggtg
cggatctgggacgagggcacctacgcgctggagaagtggcgcgagggcgaggaggtgatc
gcggtgctgaccggccggccggacggcgggctcggcggcgagccgcgccggtatgcgctg
ctgcacaccggggcgaagggcggcaagggggacgagaagaactggctgctgcacctgatg
gcgcccggggccgcggcgcacgggggacagtcacacggggggacggcgcacgggcgcggt
gtcggggtgcggaagggcggggggtccggcggggcgtcggggtccggagcgccggcgccg
tccgccgccgcatcgaccggttccggagtgtcggggtcctccgcggccgcgccgatcacg
gcggccgccgccttccggccgatgctcgccaccgccggccgcgcggcggacatccccggg
gattccgcgatcgagatgaagtgggacggctaccgcgccctggtgcgggtggcgggcgga
gcagtgaccctgaccagccggaacggcaacgacctgacggccgcgttccccgatctgctc
ggtccgatcgccgaggcggcggcggtcgactgcgtgctcgacggcgagatcgtcgcgctc
gacgaccgcggccggcccgacttcggccggctgcagacccgcggcgggctgaccaagccg
cgcgagatcgaggcggcggcgcgcgcgactccggtgcatctgatgctcttcgacctgctg
gcgatcgacggaacggaggccgtcggccgcccctacgacgagcgccgcgcggctctggag
cagctggcgaccgagaacgagcgggtgcacgtgccgtcggtcttcgacggcgacctggag
gaggcgatgtcgacgagcctcgcgctcggcctggagggcgtggtcgccaagcgccgggac
gcggcgtaccggccgggcgtccgctccggcgactgggtgaagctcacccaccaccgcgtg
caggaggtggtgatcgtcggctggcgcgagggcgagggcggcctggtgggctcggtcggc
tcgctgctgaccgcactccccggcgacgacggcctggtctactccggccgggtgggcagc
ggcttcagcgaccgagagcgccgcggcctcgtcgaccgcctcgccgagcacgccaccgac
gagcccgcagtgtccgtcccgcccgccgagtcccgcggcgtgcactgggtcgagccggtc
ctggtcggcgaggtccgctaccgcgagcgcaccgccggcggcaccctccgccagcccgtc
tggcgcggctggcgcgccgacaagtccgcggcggaggtgcgcctggagtga
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