Pseudorhizobium flavum: RFYW14_02990
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Entry
RFYW14_02990 CDS
T07144
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
rfv
Pseudorhizobium flavum
Pathway
rfv03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
rfv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
RFYW14_02990
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rfv03400
]
RFYW14_02990
Enzymes [BR:
rfv01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
RFYW14_02990
DNA repair and recombination proteins [BR:
rfv03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
RFYW14_02990
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
CAD6615876
LinkDB
All DBs
Position
1:2984483..2987023
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AA seq
846 aa
AA seq
DB search
MALETYNEKRDFKASPEPKGRKVKSGGNSFVIQKHAARRLHYDFRLEMDGVLKSWAVTRG
PSLLPGEKRLAVHVEDHPLDYGDFEGTIPQGNYGAGSVLLWDRGTWHPIGDQERGYRKGH
MEFELKGEKLEGRWHLVRMANRRGEKRENWLLIKGEDEFARAEGDADILGELPKSVKTGR
LLEELQGGTKAKAKRKTPPKTSDPSPSDEALNGPVKKNNSPKLKGAKKAELPDFVTPQLA
TLVKSAPSGSRWIHEIKLDGYRVQARINGGGVKLLTRTGLDWTHKFGDAIVDALKRLPVQ
QAVLDGEVVVNGGSGASEFSLLQQDLSEGRTDRLVFFAFDLLHLDGFDLTPTKLADRKQA
LEGILSGSSDVVRYSEHFDDEGGLVLKHACRLSLEGIISKIGDAPYRGGRGKDWVKSKCS
ARQEFVVAGYVPSSVSSSAIGSLVMGYYQDGKLMHAGRVGTGYSNKVAQTLFRQMQELKV
TKSPFEEKLTAVERKDVVFLRPELVAEVEFRGWTADAHVRHASFRGMREDKQARDVVREA
GPAMASSDDQKEPGSRTVTLTHPDRIYWPDAGVTKAGLADYYVEVWRHMAPFVVNRPLAL
VRGPNGIGKPLFFQKHAWKGMNKHIGTAKDPADPSEEDIIIRDLDGLLGLVQGGTLEIHP
WGSTIDQWEKPDMVNIDLDPGDGTTWEDVIAAAYEVRERFDAMGLSGFVKTSGGKGLHVV
APVKPKAEWPDVKAAMKALADSMAGDSPDRYVSTITKSKRKGKILIDYLRNGRGATAVAP
YSTRARPGAPVSMPIAWEELEQAIGPAYFTVNNATSRLEQLDRDPWSDFREAEAEINTSR
TKRQKR
NT seq
2541 nt
NT seq
+upstream
nt +downstream
nt
atggcactcgagacctataacgagaagcgcgatttcaaggcgtcgcccgagccgaagggc
agaaaggtcaagtccgggggaaacagcttcgtcatccagaagcatgcagcccgccggctt
cactacgacttccggctggagatggacggtgttctgaagagttgggcggtcacgcgtggc
ccgagcctcctgccgggcgagaagaggcttgccgtccatgtggaggatcatccgctcgac
tacggcgatttcgaaggaacgatcccgcaagggaattacggcgcgggctcggttctccta
tgggatcgcggcacctggcatccgatcggggatcaggaacgcggttatcgcaaaggacac
atggagttcgaactcaagggggagaagctcgagggtcgatggcatctcgtccgcatggcg
aaccgccgtggtgaaaagcgcgagaactggctcctcatcaaaggggaagacgaattcgcg
cgagccgaaggcgatgccgacatcctgggggagcttcccaagtccgtgaagaccggacgg
cttctcgaggaactgcagggcggcacgaaggcgaaggccaagcgaaaaacgccaccgaag
acatccgacccttctccttcggacgaggcgctgaatggacccgtcaagaaaaacaactca
ccgaagctgaagggagcgaagaaggcagagctgccagacttcgtgacacctcagcttgcg
acgctcgtgaagagtgcgccttccggaagccgatggatccacgaaatcaagctggatgga
taccgtgtccaggcgcgtatcaacggtggcggcgtcaagctcctgacccggaccggcctc
gactggacccacaaattcggcgatgcgatcgtggatgcactcaagcgcctgccggtgcag
caggccgtgctggacggcgaagttgtggtcaatggcggatcgggcgctagcgagttctcg
cttctccagcaggatctgagtgaggggcgaacggatcggctggtcttcttcgccttcgat
ctcctccatctcgatgggttcgacctgactcccaccaagcttgcggatcgcaagcaggcg
ctggaaggcatcctgtcaggcagcagcgacgtcgtgcgttacagcgagcatttcgatgac
gaaggagggcttgtgctgaagcacgcctgccgcctcagcctcgaggggatcatctccaag
atcggagatgccccctaccgcggcgggcggggaaaagactgggtgaagtcgaaatgctcg
gcgcggcaggagttcgttgtcgccggctatgtcccctcctccgtctccagcagcgccatt
ggctcgctggtgatgggctattaccaggacggcaagctgatgcatgctggccgggtgggc
accggttacagcaacaaggtcgcccagacgctgttccgccagatgcaggagctgaaggtc
acgaagagcccgttcgaggagaaactgacggcggtcgagcgtaaggatgtcgtcttcctc
agacccgaactggtggcggaagtcgagttccgtggctggactgctgatgctcacgttaga
cacgcctcctttcgtggtatgagggaggacaagcaggcaagggatgtggtgcgagaggcc
ggtccagccatggcaagcagcgatgaccaaaaggaaccggggagccggacggtaacgctc
acccaccccgaccgcatctactggccggatgccggcgtgaccaaggctggccttgccgat
tactacgtcgaggtttggcggcacatggctccgtttgtggtcaaccgcccccttgcattg
gtgcgaggtcccaatggcatcggcaaacctcttttcttccagaagcacgcctggaagggc
atgaacaagcatatcggcacggcgaaggatcccgccgatccttccgaagaggatatcatc
atccgggacctcgacggcttgctcggtctcgttcagggcgggacgctcgaaatccatccc
tggggctcgaccatcgaccagtgggagaagccggacatggtcaatatcgacctcgacccc
ggcgacggaacgacctgggaggacgtcatcgcagccgcctatgaggttcgcgaacgcttc
gatgcgatggggctttccggattcgtcaagacctccggaggcaaagggctgcacgtcgtc
gctccggtgaaaccgaaggcggagtggccggacgtcaaggcggcgatgaaggcgctcgcc
gacagcatggccggcgatagccccgaccgctatgtctccacgatcaccaagtcaaagcgg
aagggaaagatcctgatcgactacctgcgcaatgggcgaggcgccacggctgtggccccc
tattcgacacgggcccgccccggcgctccggtatccatgccgatcgcctgggaggagctg
gagcaggcgatcgggccggcgtacttcacggtgaacaacgcgacgagccgcctcgagcag
ttggacagggatccgtggtcggacttcagggaagcagaggcggagatcaatacgtctcgg
acaaagcgccagaagcgctag
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