Rhizobium gallicum bv. gallicum: RGR602_CH03287
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Entry
RGR602_CH03287 CDS
T03539
Name
(GenBank) ATP-dependent DNA ligase protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
rga
Rhizobium gallicum bv. gallicum
Pathway
rga03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
rga00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
RGR602_CH03287
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rga03400
]
RGR602_CH03287
Enzymes [BR:
rga01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
RGR602_CH03287
DNA repair and recombination proteins [BR:
rga03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
RGR602_CH03287
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AJD42597
UniProt:
A0A0B4X7Y9
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All DBs
Position
3328238..3329281
Genome browser
AA seq
347 aa
AA seq
DB search
MAKSPASKPLLASDKPVRSRPRKPRDPAQPNLPFDPMPDRIEPCLALLKPKPPRGEQWVY
EIKWDGYRLAVHIEPQRVRIITRGGHDWTHRFPAIERAARQLGVATAILDGEAIVVDERG
RSDFGLLQQSLGGRGGKRTSGEALFVAFDLLYFDGHDLRQLELSSRRHLLEGLIIDRAGV
IRLSEEFEADGDRLLELACEHGLEGIIAKDRRSEYRSGRLGDWVKIKCLESDSFVIVGYE
LSTVARAGIGSLLLAARKGNGLVYVGNVGTGFNERAAQELREKLDRLKVTKPAVTYDGRR
KGLVWVRPTLIAEIEYRAWTHDGKLRHASYKGLRDEEDDAVIYVLGK
NT seq
1044 nt
NT seq
+upstream
nt +downstream
nt
atggccaagtctccagcctcaaagccgctgctcgcatccgataagccggttcgatcccgg
cctcgcaagccacgcgatccagcgcagccgaaccttcccttcgatcctatgccggaccgc
atcgagccgtgcctggcgcttcttaagccgaagccgccgaggggcgaacagtgggtttac
gaaatcaaatgggacgggtatcgcctggcagtgcatatcgaacctcagcgcgtgcgcatc
atcacgcgcggcggccatgactggacgcatcgtttccccgccatcgagcgggccgccagg
cagctcggcgtggcgacggcgatcctcgatggcgaggcaatcgtggtggatgagcgtggc
cggtccgatttcgggctgctgcagcaatcgctcggcggccggggcggcaagcggacttcc
ggcgaagcgctcttcgtggcgttcgatctgctctatttcgacgggcatgatctgcggcaa
ctggagctatcttcgcgacgccatctgctcgaagggctaatcatcgatcgggcgggcgtc
attcggctgtcggaggagttcgaggcggacggcgacaggctgctggagcttgcctgcgag
catgggctcgaaggcatcatcgcgaaggatcgccgtagcgagtaccgctccggccgtctc
ggcgactgggtaaaaatcaagtgcctggagagcgacagcttcgtgatcgttggctatgag
ctttccaccgtcgcgcgggccggcattggctcgttgctgctggcagcgcgcaagggtaac
ggcctggtgtacgtcggcaatgtcgggaccggcttcaacgaacgtgcggcgcaggagctg
cgcgaaaagctcgatcggctgaaggtcacgaaaccggcggtcacatatgacggaaggcgc
aaggggctggtctgggtgcggccgacgctgattgccgagatcgagtatcgcgcgtggacg
cacgatgggaagctgaggcatgcctcctacaaaggtctgcgggatgaagaggacgacgct
gtgatttatgtgctgggcaagtag
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