Rhizobium gallicum bv. gallicum: RGR602_PC00617
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Entry
RGR602_PC00617 CDS
T03539
Name
(GenBank) ATP-dependent DNA ligase protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
rga
Rhizobium gallicum bv. gallicum
Pathway
rga03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
rga00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
RGR602_PC00617
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rga03400
]
RGR602_PC00617
Enzymes [BR:
rga01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
RGR602_PC00617
DNA repair and recombination proteins [BR:
rga03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
RGR602_PC00617
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
Motif
Other DBs
NCBI-ProteinID:
AJD44656
UniProt:
A0A0B4XC15
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All DBs
Position
pRgalR602c:654261..656903
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AA seq
880 aa
AA seq
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MASDKLSTYRSKRDFQRTAEPSGEGRIARSNRPRFVIQKHDATRLHYDLRLEFDGVFKSW
AVTKGPSLDPHDKRLAVEVEDHPLDYGDFEGTIPKGQYGGGTVMLWDRGYWKPEGKKSPK
QALEKGDFKFTLEGKRLHGGFVLVRMGNDRERGKRTNWLLIKHHDAFSVEENGAAILEEN
DTSVASGRTMEMIAAGKGRKPKPFIVAGGDVQADAVWDSHQGLAADERKSDVRAGKASVS
PVDLPDFVAPQLCQTLKRPPVGKGWIHEIKFDGYRIQMRVLDGEATLKTRKGLDWTAKYR
EIGEAASALPDSIIDGEICALDENGAPDFAALQAALSEGKAGDLVYFAFDLLYDGGEDLR
SLSVADRKARLQSLLAEAGDNPRIRFVEHFETDGDAVLRSACKLSLEGIISKQVDAPYQS
GRTETWAKSKCRAGHEVVLGAYAKTNGKFRSLLVGVYHGDHFVYVGRVGTGYGAKKVETL
LPKLKALETTNSPFTGIGAPKKGAEVTWLKPELVAEIEFAGWTADGLIRQAAFKGLRDDK
PAKEVVAERPANPSKTDLPGPALVATAARSTRRKGVKADVMGVLISNPDKPLWPDANDKG
SVTKEELARYYEAVGSWMIEHIKGRPCSIIRAPDGIGGEQFFQRHAMPGTSRLLELVKVF
GDKKPYLQIDRIEGLAAVAQIGAVELHPWNCEPQQPEVPGRLVFDLDPGPDVPFSTVVSA
ARDMRDRLEELGLISFCKTTGGKGLHVVTPLAINKRKPLSWSQAKAFAHAVCQQMARDNP
ELYLIKMTKSLRNGRIFLDYLRNDRMATAVAPLSPRARSGATVSMPLTWTQVKSDLDPKR
FTVRTVPALLAKTSAWQGYCDAQRPLEQAIKRLGKTTAAA
NT seq
2643 nt
NT seq
+upstream
nt +downstream
nt
atggccagtgataaactatcgacctatcgatcgaagcgcgattttcaaaggacggctgag
cccagcggtgaagggcgcattgcgcgcagcaatcgccctcgtttcgtcatccagaaacac
gacgcgacccgccttcactatgatctgaggctcgagttcgatggggtcttcaagtcctgg
gccgtcacgaaaggcccgtctctcgacccgcacgacaagcgattggcggtcgaggtggag
gaccacccactagattatggcgatttcgaagggactatcccgaaaggccagtatggcggc
ggtactgtgatgctatgggaccgtggctattggaagccggaaggaaagaagagcccgaag
caagctctggaaaagggcgacttcaaattcacccttgaaggcaaacgcctgcatggcggc
ttcgtgctggtgcgcatgggcaacgatcgcgaacgtggtaagcgaaccaactggctgctg
atcaagcaccatgacgccttctcggtcgaggagaatggcgcggcgatcctggaggagaat
gacacatcagtcgcctccggccgaacaatggagatgatcgccgctggcaaagggcgcaag
cccaaaccattcatcgtcgcgggaggcgacgttcaggctgatgcggtctgggacagccat
caagggctggccgctgacgagcgaaaatcggatgtgcgagccggcaaggcgtcggtttcg
cctgtcgacctgcctgatttcgtcgcgccacagctctgtcagaccctgaagcgccctccc
gtgggcaagggctggatccacgagatcaagttcgacggttaccggatccagatgcgcgtg
ctggacggtgaggcgacactgaagacccgaaagggcctcgactggacagccaaatatcgc
gaaataggcgaggcggcatctgcactgcccgattcaattatcgatggtgagatctgcgcc
ctcgacgagaatggtgcgcccgatttcgcggctctgcaggcggcgctttcggaaggcaaa
gccggggatctcgtctacttcgcattcgatcttctctacgacggtggtgaggatttgcga
tctctgtcagttgcggatcggaaggcgcggttgcagagcctgctggcggaggcaggcgac
aatccccgcatccggtttgtcgagcatttcgagactgacggcgacgcggtcctcagatct
gcctgcaagctgtcgctggaaggcatcatctcaaaacaggtggacgcgccgtaccaatcc
ggccgaacagagacctgggccaaatccaaatgtcgcgccggccacgaggtcgtgctcggc
gcttatgccaagacgaatggcaagttcagatccttgttggtcggcgtctaccacggcgac
cacttcgtctatgtcggccgcgtcggtacgggatatggcgcgaagaaagtggaaacgctg
cttccgaagttgaaggcgctcgagacgacgaattcgccctttactggcatcggcgcgccg
aagaagggggcggaagtgacttggctgaagcccgaactcgtggcggaaatcgaattcgca
ggctggaccgccgacggccttatccgccaggctgcttttaagggactgcgcgatgacaag
ccggccaaggaagtcgtggccgaacggccggcgaatccttctaaaaccgacctgccgggg
ccggcgctggtagccacggcggccaggtcgacgcgacggaagggtgttaaggcggacgtg
atgggcgtgctgatctccaacccggacaagccgctgtggccggatgccaatgacaaggga
tccgtcaccaaggaagagttggcccgctattacgaagccgtcggctcctggatgatcgag
cacatcaaagggcggccctgctccattatccgcgcccccgacgggatcggtggcgagcag
tttttccagcgacatgccatgcctggcacctcgaggcttctcgaactggtcaaggtcttc
ggtgacaagaagccatatctgcagatcgaccggatcgagggtttggctgccgtcgctcag
atcggcgctgtcgaactgcatccttggaattgcgagccgcagcagccagaagtgccaggg
aggctcgtctttgacctcgatcctggtccggacgtgcccttttccaccgtcgtttcggcg
gcccgcgatatgcgtgacaggcttgaggaactcggcttgatcagtttctgcaagacaact
ggcggcaagggccttcatgtggttaccccgcttgccatcaataaacgcaagccgctctcc
tggtctcaggcgaaagcgtttgcgcatgccgtctgccagcaaatggcgcgcgacaatccc
gagctctatctgatcaagatgaccaagagcttgaggaacggtcggatattcctcgactat
ctgcgcaatgaccgcatggcgacggcggttgcaccattgtcaccacgggcccggtccggc
gccaccgtctcgatgccgctgacatggacgcaggtcaaatccgacctcgatccgaagcga
ttcacggtcagaactgtgccggctctgctcgcaaagacatcggcttggcagggctattgt
gatgcccagcggccgctggagcaggcgattaagcgtttgggcaagacaacagccgccgca
tga
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