Rubrivivax gelatinosus: RGE_12290
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Entry
RGE_12290 CDS
T01803
Symbol
sdhB
Name
(GenBank) succinate dehydrogenase iron-sulfur subunit SdhB
KO
K00240
succinate dehydrogenase iron-sulfur subunit [EC:
1.3.5.1
]
Organism
rge
Rubrivivax gelatinosus
Pathway
rge00020
Citrate cycle (TCA cycle)
rge00190
Oxidative phosphorylation
rge00650
Butanoate metabolism
rge01100
Metabolic pathways
rge01110
Biosynthesis of secondary metabolites
rge01120
Microbial metabolism in diverse environments
rge01200
Carbon metabolism
Module
rge_M00009
Citrate cycle (TCA cycle, Krebs cycle)
rge_M00011
Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate
rge_M00149
Succinate dehydrogenase, prokaryotes
Brite
KEGG Orthology (KO) [BR:
rge00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00020 Citrate cycle (TCA cycle)
RGE_12290 (sdhB)
00650 Butanoate metabolism
RGE_12290 (sdhB)
09102 Energy metabolism
00190 Oxidative phosphorylation
RGE_12290 (sdhB)
Enzymes [BR:
rge01000
]
1. Oxidoreductases
1.3 Acting on the CH-CH group of donors
1.3.5 With a quinone or related compound as acceptor
1.3.5.1 succinate dehydrogenase
RGE_12290 (sdhB)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fer2_3
Fer4_10
Fer4_8
Fer4_17
Fer4_7
Fer4_9
Fer4_18
Fer4
Fer4_4
Fer4_3
Fer4_16
Fer4_2
Fer4_20
Motif
Other DBs
NCBI-ProteinID:
BAL94570
UniProt:
I0HNI3
LinkDB
All DBs
Position
1278356..1279060
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AA seq
234 aa
AA seq
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MTLRTFQIYRYDPDKDAKPYMQTLQVELDGSERMLLDALLKLKAVDPSLSFRRSCREGVC
GSDAMNINGKNGLACLTNMRTLPGTVVLRPLPGLPVIRDLIVDMTNFFKQYHSIKPYLIN
DERPPETERLQSPEEREELNGLYECILCASCSTACPSFWWNPDKFVGPAGLLQAYRFIAD
SRDQATSERLDNLEDPYRLYRCHTIMNCVDVCPKGLNPTKAIAKIKEMMVRRAI
NT seq
705 nt
NT seq
+upstream
nt +downstream
nt
atgacgctccgtacgttccagatctaccgctacgacccggacaaggacgccaagccctac
atgcagacgctgcaggtggagctcgacggcagcgaacgcatgctgctggacgcgctgctc
aagctgaaggcggtcgacccgtcgctcagcttccgccgcagctgccgcgaaggcgtgtgc
gggtccgacgcgatgaacatcaacggcaagaacggcctcgcgtgcctgaccaacatgcgc
acgctgccgggcaccgtcgtgctgcgcccgctgccgggcctgcccgtgatccgcgacctg
atcgtggacatgacgaacttcttcaagcagtaccactcgatcaagccgtacctgatcaac
gacgagcgcccgcccgagaccgagcggctgcagtcgcccgaggagcgcgaggagctcaac
ggcctgtacgagtgcatcctgtgcgccagctgctcgacggcctgcccgagcttctggtgg
aacccggacaagttcgtcggcccggccggcctgctgcaggcctaccgcttcatcgccgac
agccgcgaccaggcgacgagcgagcgcctcgacaacctcgaggacccgtatcgcctgtac
cgctgccacacgatcatgaactgcgtcgacgtctgcccgaaggggctgaacccgacgaag
gcgattgccaagatcaaagaaatgatggttcgccgcgccatctga
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