Rubrivivax gelatinosus: RGE_21590
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Entry
RGE_21590 CDS
T01803
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
rge
Rubrivivax gelatinosus
Pathway
rge03410
Base excision repair
rge03430
Mismatch repair
rge03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rge00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
RGE_21590 (recJ)
03430 Mismatch repair
RGE_21590 (recJ)
03440 Homologous recombination
RGE_21590 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rge03400
]
RGE_21590 (recJ)
DNA repair and recombination proteins [BR:
rge03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
RGE_21590 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
RGE_21590 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
RGE_21590 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Glyco_transf_4
Motif
Other DBs
NCBI-ProteinID:
BAL95500
UniProt:
I0HR63
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All DBs
Position
2257740..2259461
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AA seq
573 aa
AA seq
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MILQSRDVPPRAAFALEQAGVHPLLARLLAARGVRAADELDTHPARLLRPDALRGAAEAG
RLLADTIAGGGRICVVADYDCDGATACAVALRGLAMLGARREHLHYVVPDRAVHGYGLTP
AIVELAREKRPDLLVTVDNGIASLEGVAHARALGLAVLVTDHHLPAMDASGVVLPAADVI
VNPNQPGCGFDSKALAGVGVVFYVLLAARAELRARGRFDAATQPRLESLLDLVALGTVAD
VVRLDANNRRLVGLGLARVRAGRMQPGVAALFAVARRAPERAASFDFGFALGPRINAAGR
LADMTLGIECLLTDDTMRAAELAAQLDAINRERREVEAGMREAAEATVQRYGDTDTPPAV
ALFDPGFHEGVVGIVAGRLKDRLHRPTFAFACGADGALKGSGRSIPGFHLRDALDLVAKR
HPGLLLRFGGHAMAAGCTLAAGGFETFEQALRAVAGEWLDAATLERRLAVDGPLEPQWFD
APTVALLDAQVWGQGFEAPVFCDEVQVVQQRLVGEKHTKLRLRHGSAVREAIWFGHADPV
PERLRLAYRLSLDEWNGQQRVQMVVEAGLEATA
NT seq
1722 nt
NT seq
+upstream
nt +downstream
nt
gtgatcctccagtcccgcgacgtgccgccgcgtgcggccttcgcgctcgaacaggccggc
gtgcacccgctgctggcgcggctgctggccgcacgcggcgtgcgcgccgccgacgagctc
gacacccacccggcgcgcctgctgcgccccgacgcgctgcgtggcgccgccgaggccggc
cggctgctggccgacaccatcgccggcggcggccgcatctgcgtcgtcgccgattacgac
tgcgacggcgccaccgcctgcgccgtcgcgctgcgcggcctggcgatgctgggcgcgcgc
cgcgaacacctgcactacgtcgtgcccgaccgtgcggtgcacggctatggcctgacgccg
gccatcgtcgagctggcgcgcgaaaagcgcccggatctgctggtcaccgtcgacaacggc
atcgccagcctcgaaggcgtggcgcacgcgcgggcgctgggcctggcagtgctggtcacc
gaccaccacctgccggcgatggacgcctcgggcgtcgtgctgccggcggccgacgtcatc
gtcaacccgaaccagcccggctgcggcttcgacagcaaggcgctggccggcgtcggcgtc
gtcttctacgtgctgctggccgcgcgtgccgagctgcgcgcgcgcgggcgcttcgacgcc
gcgacgcagccgcggctggagtcgctgctcgacctggtggcgctgggcacggtggccgac
gtcgtgcgcctggacgccaacaaccgccgcctcgtcggcctgggcctggcgcgcgtgcgt
gccgggcgcatgcagccgggcgtcgcggcgctgttcgccgtcgcccgccgggcgcccgag
cgggccgcgtccttcgacttcggcttcgcgctcgggccgcgcatcaacgccgccggccgc
ctggccgacatgacgctgggcatcgagtgcctgctgaccgacgacacgatgcgcgccgcc
gaactggcggcgcagctcgacgcgatcaaccgcgagcgccgcgaggtcgaggccggcatg
cgcgaggccgccgaagcgacggtgcagcgctacggcgacaccgacacgccgccggccgtc
gcgctcttcgaccccggcttccacgaaggcgtggtcggcatcgtcgccggccggctcaag
gaccggctgcaccggccgaccttcgctttcgcctgcggtgccgacggcgcgctgaagggc
tccgggcgatccattcccggcttccacctgcgcgacgcgctggacctggtcgccaagcgc
caccccgggctgctgctgcgtttcggcggccacgcgatggccgccggctgcacgctggcc
gcgggtggcttcgaaaccttcgagcaggcgctgcgtgccgtcgccggcgaatggctggac
gcggcgacgctggagcgccggctggccgtcgacggcccgctggagccgcagtggttcgac
gcgccgacggtggcgctgctcgacgcccaggtctggggccagggtttcgaggcgccggtg
ttctgcgacgaggtgcaggtcgtgcagcagcgcctggtcggcgagaagcacaccaagctg
cgcctgcgccacggcagcgccgtgcgcgaggcgatctggttcggccacgccgacccggtg
cccgaacgcctgcgcctggcctaccgcttgtcgctggacgagtggaacggccagcagcgt
gtgcagatggtggtcgaagcggggctcgaagccacggcctga
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