Rubrivivax gelatinosus: RGE_26920
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Entry
RGE_26920 CDS
T01803
Symbol
mfd
Name
(GenBank) transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
rge
Rubrivivax gelatinosus
Pathway
rge03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rge00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
RGE_26920 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rge03400
]
RGE_26920 (mfd)
Enzymes [BR:
rge01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RGE_26920 (mfd)
DNA repair and recombination proteins [BR:
rge03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
RGE_26920 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
CarD_TRCF_RID
Helicase_C
MFD_D3
ResIII
UB2H
AAA_30
ERCC3_RAD25_C
Glyco_tran_WecG
SNF2-rel_dom
DUF1217
DUF3638
Motif
Other DBs
NCBI-ProteinID:
BAL96031
UniProt:
I0HSP4
LinkDB
All DBs
Position
2845250..2848687
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AA seq
1145 aa
AA seq
DB search
MQIPTIAPGKRFTLPRPVGSADALLLARLAAARKAEQRLLAVVTADPADTTRLAEELPFF
DPGLRVAVFPDWETLPYDTFSPHQDLISERLATLWRVQQGEVDVVLMPATTALVRLAPPS
FMAGYTFHFKQKARLDEAKLKSQLTLAGYQHVSQVVSPGEYAVRGGLIDLYPMGSLVPYR
VDLFGDEVDSIRTFDPDSQRSLYPVPEVRLLPGREFPMDEAARTAFRARWREKLDGDPTR
SRIYKDIAQGIATGGIEYYLPLFFDEIASVFDYLGETAAVALHGEVDQALERFWTDTRER
HRFLQHDPERPLLPPEAIFLRPDEFFGRTQPHATLALRGNEPVDWARPLPDIAVDRGAPE
PLAGLERHLKATPHRVLLAAESEGRRESLLELLRDHRIDLPTVANLAEFLSGDERFAIVA
APLAQGFHWHEPAAGVSLQLLTETELFATAPQARRRRKQEQTSNVDALIKDLSELKIGDP
VVHMNHGIGRYRGLVEIDAGEGPSEFLHLEYADKATLYVPVAQLHLISRYTGVSAEEAPL
HKLGSGQWDKARRKAAEQVRDTAAELLNLYARRAAREGFAHRFSPHDYEAFAASFGFEET
PDQRAAIHAVIQDMISPRPMDRLVCGDVGFGKTEVALRAAFVAVHAGKQVALLAPTTLLA
EQHYQTLVDRFGKWPVKIAELSRFRSAKEVKAALEGIADGTVDIVVGTHKLLSSDCKFAR
LGLLIIDEEHRFGVRHKEAMKALRAEVDVLTLTATPIPRTLGMALEGLRDLSVIATAPQR
RLAIKTFVRSENNSTIREAVLRELKRGGQVYFLHNDVESIQARRQKLEELLPEARIGVAH
GQMPERELEHVMRDFVAQRHNVLLCSTIIETGIDVPTANTIVISRADKFGLAQLHQLRGR
VGRSHHQAYAYLLVPDVEALTKQAAQRLEAIQQMEELGSGFYLAMHDLEIRGAGEVLGEN
QSGNMMEVGFQLYNDMLSEAVRSLKAGKEPDLLSPLAATTEINLHAPALLPDAYCGDVQT
RLNLYKRLATAEKGEQIDALLEEITDRFGKLPAQGQALFDTHRLRVLARPYGVQKIDAGP
KVMNIVFRPNPPIEPLRIIELVQKNRAIKLAGNDKLRIDREIADAKDRAQYVRDVLRALG
QPRPA
NT seq
3438 nt
NT seq
+upstream
nt +downstream
nt
atgcagattccgaccattgccccgggcaagcgcttcacgctgccgcgcccggtgggttcg
gccgacgccctgctgctggcccgcctggccgcagcgcgcaaggccgagcagcgcctgctg
gccgtcgtcacggccgatcccgccgacaccacccgcctcgccgaagagctgccgttcttc
gaccccggcctgcgcgtggccgtcttccccgactgggagacgctgccctacgacaccttc
agcccgcaccaggacctgatctccgagcgcctggcgacgctgtggcgcgtgcagcaaggc
gaggtcgacgtcgtgctgatgccggccacgaccgcgctggtgcggctggcgccgccctcg
ttcatggcgggctacaccttccacttcaagcagaaggcgcggctggacgaagcgaagctg
aagtcgcagctgacgctggccggctaccaacacgtgagccaggtcgtgtcgccgggtgaa
tacgcggtgcgcggcgggctgatcgacctgtacccgatgggctcgctcgtgccctaccgc
gtcgacctgttcggcgacgaggtcgactcgatccgcaccttcgaccccgacagccagaga
agcctctacccggtgcccgaggtgcggctgctgcccgggcgcgagttcccgatggacgag
gcggcgcgcaccgccttccgcgcgcgctggcgcgagaagctcgacggcgacccgacgcgc
tcgcgcatctacaaggacatcgcgcaaggcatcgcaaccggcggcatcgagtactacctg
ccgctgttcttcgacgagatcgccagcgtcttcgactacctgggcgagaccgccgcagtc
gcgctgcacggcgaggtcgaccaggcgctggagcgtttctggaccgacacacgcgagcgc
caccgcttcctgcagcacgacccggaacgcccgctgctgccgcccgaggcgatcttcctg
cgcccggacgagttcttcggccgcacccagccgcatgcgacgctggccttgcgcggcaac
gagccggtggactgggcgcggccgctgcccgacatcgccgtcgaccgcggcgcgcccgag
ccgctggccgggctcgaacgccatctgaaggcgacgccgcaccgcgtgctgctggcagca
gagagcgaaggccggcgcgaaagcctgctggagctgctgcgcgaccaccgcatcgacctg
ccgacggtcgccaacctggccgagttcctgtccggcgacgaacgtttcgccatcgtcgcc
gcgccgctggcccagggcttccactggcacgagccggccgccggcgtgtcgctgcagtta
ctgaccgagaccgagctcttcgccaccgcgccgcaggcccgccggcggcgcaagcaggag
cagaccagcaacgtcgacgcgctgatcaaggacctgtcggagctgaagatcggcgacccc
gtggtgcacatgaaccacggcatcggccgctaccgcggcctggtcgagatcgacgccggc
gaaggcccgagcgagttcctgcacctggagtacgccgacaaggcgacgctgtacgtgccg
gtggcgcagctgcacctgatcagccgctacaccggcgtcagcgccgaagaagcgccgctg
cacaagctgggctcgggccagtgggacaaggcgcggcgcaaggccgccgagcaggtgcgc
gacaccgccgccgagctgctgaacctgtacgcccggcgtgccgcgcgcgaaggcttcgcg
caccgcttcagcccgcacgactacgaggccttcgccgccagcttcggcttcgaggagacg
cccgaccagcgcgccgcgatccacgccgtcatccaggacatgatcagcccgcggccgatg
gaccggctggtctgcggcgacgtcggcttcggcaagaccgaggtcgcgctgcgtgccgcc
ttcgtcgcggtgcacgccggcaagcaggtggcgctgctggcgccgaccacgctgctggcc
gagcagcactaccagacgctggtcgaccgcttcggcaagtggccggtgaagatcgccgag
ctgtcgcgcttccgctcggccaaggaagtgaaggcggcgctcgaaggcatcgccgacggc
acggtggacatcgtcgtcggcacgcacaagctgctcagctccgactgcaagttcgcgcgc
ctgggcctgttgatcatcgacgaggagcaccgcttcggcgtgcgccacaaggaggcgatg
aaggcgctgcgcgccgaggtcgacgtgctgacgctgacggccacgccgatcccgcgcacg
ctgggcatggcgctcgaaggcctgcgcgacctgtcggtcatcgccaccgcgccgcaacgg
cggctggcgatcaagaccttcgttcgcagcgagaacaactcgacgatccgcgaagccgtg
ctgcgcgagttgaagcgcggcggccaggtctacttcctgcacaacgacgtcgagtcgatc
caggcgcggcgccagaagctggaggagctgctgcccgaggctcgcatcggcgtcgcccac
ggccagatgcccgagcgcgagctggaacacgtgatgcgcgacttcgtcgcccagcgccac
aacgtgctgctgtgctcgacgatcatcgagaccggcatcgacgtgccgacggccaacacc
atcgtcatcagccgcgccgacaagttcggcctggcgcagctgcaccagctgcgtgggcgt
gtcggccgcagccaccaccaggcctacgcctacctgctggtgcccgacgtcgaggcgctg
accaagcaggcggcgcagcggctggaggcgatccagcagatggaggaactgggcagcggc
ttctacctcgcgatgcacgacctggagatccgcggcgccggcgaggtgctgggcgagaac
cagagcggcaacatgatggaagtcggcttccagctctacaacgacatgctgtcggaagcc
gtgcgctcgctgaaggcgggcaaggagcccgacctgctgtcgccgctggccgcgaccacc
gagatcaatttgcacgccccggcgctgctgcccgacgcctattgcggcgacgtgcagacc
cggctgaacctctacaagcgcctggccaccgccgagaagggcgagcagatcgacgcgctg
ctggaggagatcaccgaccgcttcggcaagctgccggcgcagggccaggcgctgttcgac
acccaccgcctgcgcgtgctggcgcggccctacggcgtgcagaagatcgacgccgggccc
aaggtgatgaacatcgtcttccgccccaacccgccaatcgagccgctgcgcatcatcgag
ctggtgcagaagaaccgcgcgatcaagctcgccggcaacgacaagctgcgcatcgaccgc
gagatcgccgacgcgaaggatcgtgcgcagtacgtgcgcgacgtgctgcgtgcgctgggc
cagccgcgccccgcctga
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integrated database retrieval system
