Roseomonas gilardii: RGI145_02125
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Entry
RGI145_02125 CDS
T04615
Name
(GenBank) hypothetical protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
rgi
Roseomonas gilardii
Brite
KEGG Orthology (KO) [BR:
rgi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
RGI145_02125
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rgi03400
]
RGI145_02125
Enzymes [BR:
rgi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
RGI145_02125
DNA repair and recombination proteins [BR:
rgi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
RGI145_02125
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_N
Motif
Other DBs
NCBI-ProteinID:
APT56089
UniProt:
A0A1L7ABS1
LinkDB
All DBs
Position
1:485876..486475
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AA seq
199 aa
AA seq
DB search
MTDRDPLTRYRQKRDFRQTPEPAGVIRHGGRPTGLFVVQKHDATRLHYDFRLELDGVLKS
WAVTRGPSLDPEEKRLAVEVEDHPLDYGGFEGVIGSGYGAGTVLLWDRGSWEPLSEDPAA
DLAGGRLHLRLHGTRLKGGWHLVLMRGRGRGTRRNWLLIKDRDEEARPGSGDALLREATT
SVLSGRDLAQIATGAPAPG
NT seq
600 nt
NT seq
+upstream
nt +downstream
nt
atgaccgatcgcgacccgctcacccgctatcgccagaagcgcgatttccggcagacgccg
gaacccgcaggcgtgatccgccacggtgggcggcctacgggtctcttcgtggtgcagaag
cacgacgccacgcgtctgcactacgacttccgcctcgaactggatggtgtgctgaaatcc
tgggcagtgacgcgcggccccagcctcgatccggaggagaagcgcctcgcggtggaggtg
gaggaccatcccctcgactatggcggcttcgagggggtgatcggcagcggctacggcgcc
ggcacggtgctgctctgggaccgtgggagctgggaaccgctctcggaggacccggcggcg
gacctggccggggggcgtctgcacctccgcctgcacggcacgcgtctgaagggcggttgg
catctggtgctgatgcgcggacgcgggcgtgggacgcgccggaactggctgctgatcaag
gaccgcgacgaggaggcccggcccggctccggcgacgcactgttgcgcgaggccacgacc
tccgtcctgtccggacgcgacctggcccagatcgccacgggcgcgccggcacccggatga
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