Mediterraneibacter gnavus: RGna_09040
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Entry
RGna_09040 CDS
T06719
Name
(GenBank) PRD domain-containing protein
KO
K19505
sigma-54 dependent transcriptional regulator, gfr operon transcriptional activator
Organism
rgn
Mediterraneibacter gnavus
Brite
KEGG Orthology (KO) [BR:
rgn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
rgn03000
]
RGna_09040
Transcription factors [BR:
rgn03000
]
Prokaryotic type
Helix-turn-helix
Other families
RGna_09040
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Sigma54_activ_2
AAA
EIIA-man
PRD
AAA_5
HTH_24
AAA_22
AAA_16
MarR_2
HTH_11
TrmB
HTH_Crp_2
AAA_14
NACHT
RuvB_N
HTH_5
bpMoxR
HTH_20
MarR
HTH_29
Rrf2
nSTAND3
AAA_2
DUF6023
AAA_29
Motif
Other DBs
NCBI-ProteinID:
QHB23625
LinkDB
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Position
complement(1782494..1785154)
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AA seq
886 aa
AA seq
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MEAKDRVYQALCRMSKSDCQITAAALAEELNLSRQVVSHYLNRLLEEGSVEKTLTRPVCW
NIRKQQRENVQGSVSEERKEIEEVLPEVRREDVFDTMIGADGSQKNVIERCKAAVSYPPD
GLPILITGESGVGKSFLARLIHQYAVSSAVISESAPLVVLNCADYANNPELLSAALLGYK
KGSFTGADTDKEGLLQEADGGYLFLDEIHRLSYENQEKLFIFMDTGKYRPLGDKNWKAAK
VRFIFATTEIPEKVLLETFRRRITVQTSIGSIAERPLMERLQLIYRFYQKEAVKINRDIL
IEKDAMQYLCFSKLPGNIGKLENLVRVSCAEAYFRQQEEKLLKISSRELQNETPDKGDSL
EEIVCPMKVLCSQESESAYEACVTEHALNVSALWEEVVKASWDKTDMLYLRYKHQMKTWE
KYVTVSSSVFENTVRKMFESSCRLVLKRYGIRVTDQCLKELYLSYKMFSQMELDAEMEWK
LSVYFEQSLSRAHYIAKRLFEKVVSLEQGCGKHVLFLFTVALHEYVVESVELAGLIAAHG
DTTASSIAKVVNQACGTFVFEAIDMPMDSSFDAMIDKVRSYLEDIPGGRGVILLVDTGSL
SRMYTLIKNSLSGDLMIINNVSTAIALDIGIKILGHSSFTEITQSTKKICSFDVQFFEGL
SQGKNIVISCMSGVGIAEKIQEMMKSVLGDCGLDFITMDYKELIRVLGEKGEKSFEQTLL
ILTTSSLSEEVKTPWLSMYDVLDGSGEQVLWDSLKTVINPEQFEVLKREFVKFFSMEGIV
SRLQFLNPAVVVREVELILMRYEKYYALEMSGHVRLNLYMHIAFMFERLMIAQDGYEEEQ
RELSEQEKEFYRISRIVFAEAEKKYRIRLDEYELSMLYELFKRLIK
NT seq
2661 nt
NT seq
+upstream
nt +downstream
nt
atggaagcaaaagacagggtatatcaggcgctgtgcaggatgtcgaagagtgattgtcag
attacggcggcagcacttgcagaagagctgaatttaagccgacaggtagtcagccattat
ctgaaccgtcttttggaagaaggtagtgtggaaaagacacttacccggccggtatgctgg
aatatcaggaaacaacagagagagaatgtgcagggttctgtcagtgaagaaagaaaagaa
atagaagaagtgctgccggaagtacgccgggaagacgtctttgatacaatgatcggtgct
gacggcagccagaaaaatgtaattgaaagatgcaaagcggcggtgtcatatccgccggac
ggactgccaatactgattacaggagaaagtggggtcggaaaaagctttctggcaagactg
attcaccaatatgcagtttccagtgcagttatcagcgagagtgctccgttggtagtgctg
aattgtgcagattatgcgaacaatccagagctattgtcggcagcacttttagggtataaa
aagggaagctttaccggagcggatacagataaagaggggcttttgcaggaagcggacggc
ggttatctttttctggacgagattcaccggctgtcttatgaaaaccaggaaaagcttttt
attttcatggacacaggaaaatatcgaccgcttggtgacaagaactggaaagcggcgaag
gtaaggtttatttttgcaacaacggagattccggaaaaagtccttctggaaacatttcgc
cggagaattaccgtacagacttcaatcggaagtattgcggaaagaccgctgatggaacga
ctacagttaatttatcggttttatcagaaagaagcggtaaagatcaacagggatattctg
attgaaaaggatgcgatgcagtatctgtgcttttcaaagttacctggaaatatcggaaaa
ctggaaaatcttgtgcgggtaagctgtgcagaagcatattttcggcaacaggaggaaaaa
ctgttgaaaatctcttcaagagagctgcagaatgagacaccggacaagggtgattctttg
gaagaaattgtctgtccgatgaaagttttgtgcagtcaggaaagtgaatctgcgtatgaa
gcatgtgttacggaacatgctttgaatgtttcagctctctgggaagaggtggtgaaggct
tcctgggataaaacagatatgttatatctacggtataaacaccagatgaagacttgggag
aaatatgtcacagtgagttcttcggtgttcgaaaatacggtaagaaagatgtttgagagc
agctgcagattggtgctgaaacgctatggaattcgtgtgacagaccaatgtctgaaggaa
ctgtacctgagttataagatgttctcgcaaatggaattggatgcagagatggagtggaaa
ttgtctgtttattttgaacagtctctttcaagggcacattatattgcaaaacgtcttttt
gagaaagtggtatcgttggaacaaggctgtggaaaacacgtcctgtttttgtttacagtt
gctctgcatgagtatgttgtagagtctgttgaactggcaggtttgattgctgcgcatgga
gatacaacggcgagcagtattgcaaaagtggtgaatcaggcatgtggaacctttgtgttt
gaagcaattgatatgccgatggactcttcttttgatgcgatgattgataaagtaaggagt
tatctggaagatattccgggaggaagaggagtgattctgctggtagatacaggttctctc
agcagaatgtatacattgatcaaaaacagtctgtcaggggatctgatgattatcaataat
gtttctacggcaattgcgctcgatatcggaattaaaatactgggacatagttcctttacg
gaaattacacagagtacaaagaaaatctgtagttttgatgtacagttttttgaaggtctt
tcacagggaaaaaatattgtcatatcctgtatgtccggagtgggaattgcggaaaagatt
caggaaatgatgaaaagcgtgctcggagactgcgggcttgattttattacgatggattat
aaggaactgattcgggttttgggtgaaaaaggggaaaaatcctttgagcagacactgttg
attttgacgacttcatcactttcagaagaagtaaaaactccatggctgagtatgtatgat
gtgttggatggaagtggagaacaggtgctgtgggattccttaaagacagtaataaatccg
gagcagtttgaagtgctcaaaagagaatttgtaaagtttttctcaatggaaggtatcgta
agccgactgcagtttttgaaccctgcggttgtagttcgggaagtagaactgattttgatg
cggtatgaaaagtattatgcattggaaatgtcggggcatgtgagactaaatttgtatatg
cacattgcatttatgtttgagcgtctgatgatcgcacaggatggttatgaggaagaacaa
cgggaattatctgagcaagagaaggagttctatcggatttctcggattgtatttgcggaa
gcagaaaaaaaatacagaatcagattggatgaatatgaattgtcgatgctatacgaattg
tttaaaagactgattaagtag
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