Rhodococcus globerulus: KYT97_28745
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Entry
KYT97_28745 CDS
T07544
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
rgo
Rhodococcus globerulus
Pathway
rgo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rgo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
KYT97_28745 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rgo03400
]
KYT97_28745 (mfd)
Enzymes [BR:
rgo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
KYT97_28745 (mfd)
DNA repair and recombination proteins [BR:
rgo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
KYT97_28745 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
IstB_IS21
RecG_dom3_C
AAA_22
DUF3638
DUF1474
Motif
Other DBs
NCBI-ProteinID:
QXW02200
LinkDB
All DBs
Position
complement(6315223..6318849)
Genome browser
AA seq
1208 aa
AA seq
DB search
MTALPAAQTSLAGLAEAALADAAFASVTEAIGRATLDIVAPKPARPFIAAALASRTPVLL
VTATGREADDLTAELTEMIGGSVAQFPSWETLPHERLSPSADTVGRRIEVLRRLARPDDS
SYGAPLRVVVTTVRSLVQPMAPGLGEIEPITLRVGTEIDFESVLVRLVEMAYTRVDMVGK
RGEFAVRGGILDLFSPTADHPVRIEFWGDEVSELRYFSVADQRSLPDIDVDLVIAPPCRE
LLLTPDVRDRAAAIAAENQADASLVEMLDKISAGIPVEGMEALLPVLKPGELQLLSDVLP
AGTHILLCDPEKVRTRATDLVRTGQEFLEASWTAASIGGAAPLDTSILAGGDSGLGASAY
RSLRQVRESAEAGGRPWWTVSPLASGSGEELELPIQPAPQVRGSDDLLAELFVSLRAHVT
TGGRAAVVVAGAGTAKRVLERLGEAEVPATMAEPGAVPARGQVSVLRGSLHDGLVLHGDG
DVPGMVVVTEADLTGNRVAAVGDGKRLPAKRRNQVDPLALAAGDMVVHDQHGIGRFVEMV
ERTIGGARREYLVIEYAASKRGHPGDRLFVPMESLDQLSRYVGGELPALSKLGGSDWANT
KRKARKAVREIAGELVQLYAARQAAPGHAFGPDTPWQKELEDAFAFTETVDQLTVISEVK
GDMEKAVPMDRVVIGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLAQQHLQTFTERM
ASFPVKVRGLSRFTDAKDSKEIITSMAEGEIDIVIGTHRLLQTGVRWKDLGLVIVDEEQR
FGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSMAGIREMSTILTPPEERHPILTYVGAY
ADKQVAAAIRRELLRDGQVFYVHNRVSSIDKAAKRIRELVPEARVVVAHGQMNEDTLEKT
VQGFWERDFDVLVCTTIIETGLDISNANTLIVERADSLGLSQLHQLRGRVGRSRERGYAY
FLYPPEKPLTETAYDRLATISQNSDLGAGMAVAMKDLEIRGAGNVLGAEQSGHVAGVGFD
LYVRLVGEAVEAYRAAADGLPITTDEGPKEVRIDLPVDAHIPPDYVTSDRLRLEGYRKIA
AATDSEGIAAVVEELVDRYGPIPEEVRRLVSVAKLRLLCREYQLEEVAVTGTQLKISPMS
LPDSKQIRLKRIYPSAQYRATTGLVQLPLPRTGGVGSDRLRDVELLQYIADFILAIDGRA
ASAVVMEA
NT seq
3627 nt
NT seq
+upstream
nt +downstream
nt
ttgactgccttgcccgccgcccagacttcgcttgccggccttgccgaggccgcgctcgca
gacgcggccttcgcctcggtgaccgaggcgatcggtagagccaccctcgacatcgttgcg
ccgaaaccggcgaggccgttcatcgcggccgcgcttgcatcgcgaacgccagtgctgttg
gtgaccgcaacaggtcgtgaagccgacgatctgacggccgaactcaccgagatgatcggc
ggatcggttgcacagttcccgtcgtgggaaacgttgcctcacgagcggctctcgcccagc
gcggataccgtcgggcggcgtatcgaggttctccgacgccttgctcgtcctgacgattcc
tcgtacggtgcgccgctgcgggttgtggtcacgaccgtgcgctctctggttcagccgatg
gcccccgggctgggtgagatcgagccgatcacactgcgcgtcggcaccgagatcgacttc
gagtcggttctggtccggctggtggaaatggcgtacacgcgcgtcgacatggtcggcaag
cgcggcgagttcgcagtgcggggcggcattctcgaccttttctcacccaccgcggatcac
cctgttcgcatcgagttctggggcgacgaagtttcggagctgcgctacttctccgttgcc
gaccagcgttcgctaccggatatcgacgtcgacctcgtcatcgcgccgccgtgccgtgaa
ttgttgttgacccccgacgttcgggatcgggctgccgcgattgccgcagagaaccaggcc
gacgcctcgctggtggagatgctggacaaaatctcggcgggtattccggtggagggcatg
gaggcgttgcttccggtgctgaaacctggtgaattgcaattactttccgatgttcttccc
gccggaacccacattctgctctgtgacccggagaaagtgcgcacccgcgcaacggatttg
gttcgcaccgggcaggagttcctggaagcgtcgtggactgcggcgtccatcggcggcgcg
gcacccctcgacacctccatcctcgccggcggcgactcggggctcggcgcgtctgcctac
cggtcgctgcgtcaggtgcgcgaatccgcagaagcgggtgggcgtccgtggtggaccgtc
agcccgctggcatcggggagtggtgaagaactcgaactcccgattcagcctgccccacag
gtgcgtgggtcggacgatcttcttgccgagctgttcgtcagcctccgtgcgcacgtgacc
acgggtggacgcgcggccgtggttgttgccggtgccggcacggcaaaacgagtcctcgaa
cgactcggtgaggccgaggttccggccacaatggctgagccaggtgcggtcccggcacgc
ggtcaggtctcggtattgcgtggatcgttgcacgacggtctggttctgcacggcgacggc
gacgttcccggaatggttgtcgtcaccgaggccgacctcaccggcaatcgagttgcggca
gtgggcgacggtaagcggttgccggccaagcgtcgcaaccaagtggatccgcttgcactt
gccgcaggcgacatggtcgttcacgatcagcacggtatcggccgctttgtcgagatggtc
gaacgcaccatcggcggggccaggcgtgagtacctggtcatcgaatacgctgcgagcaag
cgaggccatccgggggaccggttgttcgtgccgatggaatcgctcgatcagctctcccgc
tatgtcggcggtgagctgcccgcgctgagcaagctcggtggatccgattgggcgaacacc
aaacgtaaggcgcgcaaagcggttcgtgaaatcgcgggcgaactcgtgcagctctatgcc
gcgcgtcaggcagcacccggtcatgcattcggccccgacactccgtggcagaaggaactc
gaggatgcctttgcgttcaccgagacggtcgatcagctgaccgtgatcagtgaagtcaag
ggcgacatggagaaagccgtcccgatggaccgcgtcgtgatcggtgacgtcggatacggc
aagaccgagatcgctgtgcgagccgccttcaaagcggtacaggacggtaagcaggtggct
gtcctggttccgacaactctgctggcacagcagcatcttcagacgttcaccgaacggatg
gcgtcgttcccggtgaaggtacgcggattgtcgcgcttcaccgatgccaaggactccaag
gaaatcatcacttccatggccgagggcgagatcgacatcgtcatcggcacacatcgcctt
ctgcagaccggggttcggtggaaggacctcggtttggtgatcgtcgacgaggaacagaga
ttcggcgtcgagcacaaggaacacatcaaatccttgcggacccacgtcgatgttctgact
atgtcggcaacgccaatccctcgtacgctggaaatgagcatggccggcatccgcgagatg
tctaccattctgaccccgccggaagagcgtcatccgattctgacgtacgtcggggcgtat
gcagacaagcaggtcgcagccgccatcaggcgtgagctcctgcgcgacggtcaggtgttc
tacgttcacaaccgcgtcagctcgatcgacaaggctgccaagcgaatccgtgaactggta
ccggaagcgcgggttgtggtcgcccacggtcagatgaacgaggacactctcgagaaaacg
gttcaaggattctgggagagagatttcgacgtcctggtgtgtaccacgatcatcgagacg
ggtctcgatatctccaacgcgaatacgttgatcgtcgagcgcgctgattcactcggcctc
tcacagctccaccagttgcgaggtcgcgtcggacgcagccgggaacgcggatacgcatac
ttcctgtatccgccggagaagccgttgaccgaaacggcatacgatcgccttgccaccatt
tcgcagaactccgatctcggcgccggtatggccgttgccatgaaggacctcgaaatccgc
ggcgccggtaacgtcctcggcgccgagcagtccggacacgttgccggcgtcgggttcgac
ctgtacgtccgcctggtcggcgaggcggtcgaggcctaccgcgccgccgctgacgggctc
ccgatcacgaccgacgagggcccgaaagaggttcgcatcgatctacccgtcgacgcacat
attccgccggactatgtcaccagcgatcggcttcgtctcgaaggttatcgaaagattgct
gccgcaacggattccgagggcatcgctgccgtcgtagaagaacttgttgaccggtacggc
ccgataccggaagaagtgcgtcgactcgtatcggtggcgaagctgcggctgctgtgccgc
gagtaccaactcgaggaagtggcggtaaccggtactcaactcaagatctcgccaatgtcg
ctgcccgattccaagcagatcaggctcaagcggatctatccgagcgcgcagtaccgggcg
acgacaggcttggtgcagctgccactgcctcgaaccgggggagtgggttccgatcgcctg
cgcgacgtggaattgctgcaatacattgccgatttcatcctggcgatcgacggtcgcgcc
gcgagtgccgtggtgatggaggcatga
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