Rhodococcus globerulus: KYT97_29675
Help
Entry
KYT97_29675 CDS
T07544
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
rgo
Rhodococcus globerulus
Pathway
rgo03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
rgo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
KYT97_29675
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rgo03400
]
KYT97_29675
Enzymes [BR:
rgo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
KYT97_29675
DNA repair and recombination proteins [BR:
rgo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
KYT97_29675
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
QXW02362
LinkDB
All DBs
Position
complement(6500408..6502678)
Genome browser
AA seq
756 aa
AA seq
DB search
MATTDRGQITLDGITVPVTNLGKVLYPESGTTKAEVIDYYTRISAVMIPHVVGRPGTRKR
WPNGVDGQSFFEKNLASSAPDWLTRASLQHSDRVVTYPIFDSVASLAWLGQQAALELHVP
QWRFDGSERGPATRLVFDLDPGDGVGLAECAEVARSIRDLVGTLGWTAYPVTSGSKGIHL
YVPLDRPLDGSGASTVAKQIAVGLEKIHPDLVTATMARNVRAGKIFVDWSQNNAAKTTIA
PYSMRGRAQPYVAAPRSWDELDDPKLRHLLFDEVLERVDSGGDLLAALDPPVVQQDSLTR
YRNKRAADRTPEPVPDSVSPGALGNSFVIQEHHARRLHYDVRLERDGVLVSWAVPKGVPT
TAGENRLAVHTEDHPLEYATFSGTIPKGEYGGGSMTIWDSGTYETEKWRDDEVIVRLDGN
RVQGRFALIRTKGDQWLMHLMKDQKSSFGIEFPKGIEPMLATPGSLEGLDEDEWAFEGKW
DGIRVILEFHSGTLSLRSRAGNDKTGDYPALAGLASVLDGHEVVLDGEVVSYNAEGVTDF
GALQRGGEPEFLAFDLLYLDGVSLLRKSYTDRRTVLSALAAKVGDLTVPTQIDGTPANAL
EVSRESGWEGIVAKRRASVYLPGRRGSSWIKVKNWRTQEVVIGGWRTGQGNRARGIGALL
MGIPGEDGLSYVGRVGTGFTDRDLETLLAVLEPLQQKESPFEDDVPTEDRKGAVWIRPEL
VGEVRFMDWTASGRLRHPSWRGMREDKSPTDVRRDT
NT seq
2271 nt
NT seq
+upstream
nt +downstream
nt
atggcgacgactgatcggggccagatcacactcgatggcataaccgtgcccgtgaccaat
ctcgggaaggtgctctatcccgagagtggaaccaccaaagccgaagtcatcgactactac
actcgaatttccgcagtcatgattccccatgtcgtcggtaggccgggaacacggaaacgt
tggccgaacggggtggacggtcaatcatttttcgagaagaaccttgcatcgtcggcgccg
gattggctgacccgcgcgtcattacagcattccgaccgagtggtcacgtatcctattttc
gattcagttgcttcgcttgcctggctcggtcaacaagcagccctcgaattacatgttccg
caatggcgattcgacggttccgagcgcgggcccgcaacccgattggtgttcgatctcgac
ccgggggatggcgtcgggctggctgaatgtgccgaagtggcccgttctatccgtgatcta
gtgggaacgctgggctggacagcgtatcccgttaccagcggaagcaagggtattcatctc
tatgtgccgctcgatcggccactggacggcagtggtgcgtcgaccgtcgccaagcagatc
gcggtgggactcgagaagatccatccggatctggtgacagcgacgatggcgcgaaatgtt
cgagccggcaagatatttgtcgactggagccagaacaacgcggccaaaaccacaatcgct
ccgtactcgatgcgtgggcgtgcccagccttatgttgccgcgccgcgcagttgggacgaa
ctcgacgacccgaagttgcgacacttgctgttcgacgaggttctcgaacgcgttgattcc
ggcggtgacttgttggctgctctcgaccctcccgtggtgcagcaggattcgttgacacga
tatcgaaacaagcgtgcggcagaccggacgccggagccggtaccggattctgtttccccc
ggcgcgctcggcaattcctttgtgattcaggaacatcacgcgcgacgcctgcactacgac
gttcggctcgaacgtgacggtgtgctggtgtcgtgggcagttccgaaaggggtacccacc
accgcgggggagaaccggctggctgtccacaccgaggaccatccgctcgagtacgccacc
ttctccggcacgatccccaagggagaatacggcggcggatcgatgacgatctgggattcc
ggcacgtacgagacggagaagtggcgcgacgacgaggtgatcgtgcggttggacgggaac
cgagtgcagggcagattcgcgctgattcggaccaaaggtgaccagtggctgatgcatctg
atgaaggatcagaaatccagcttcggaatcgagtttccgaaagggatcgaaccgatgctc
gcgacgcccggatcgctcgagggtctggatgaggacgagtgggcattcgagggtaaatgg
gatgggatacgggtgattctcgaatttcattcgggcacactgtcgctccgcagccgagcc
ggtaacgacaagaccggcgactatcccgcgctggctggacttgcttcggttctcgacggc
cacgaggtggttctcgacggtgaagtggtgtcgtacaacgcggaaggtgtcaccgatttc
ggggctttgcagcgcggcggtgaacccgagtttctggctttcgatctcctgtatctcgac
ggagtttccctgctgcgcaagtcgtacaccgatcgtcggactgtgctgagtgcgttggcc
gcgaaggtcggcgatctcaccgtgccaacccagatcgacggaaccccggcgaacgcgctg
gaggtgagccgcgaatccggctgggaggggattgtcgcaaagcgtcgcgcctcggtgtac
ctgccggggcggagggggtcgagttggatcaaggtcaagaactggcgcacacaagaggta
gtgatcggcgggtggcgcacgggtcaaggcaatcgggcccgggggataggcgcacttctc
atgggaattccgggtgaagacgggttgagttacgtcggccgagtggggaccggcttcacc
gaccgcgacttggaaacattgctggcggtactggaacccttgcagcagaaggaaagcccg
ttcgaagatgatgttccgacggaggatcgcaagggagcggtatggatccgccctgaactg
gtcggtgaagtgcgattcatggactggaccgcgagtggtcgcctgcggcaccccagttgg
cgggggatgcgggaggacaagtcgccgacggacgtgcggcgggatacgtag
DBGET
integrated database retrieval system
