Rhodococcus gordoniae: NMQ04_04360
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Entry
NMQ04_04360 CDS
T08682
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
rgor
Rhodococcus gordoniae
Pathway
rgor03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
rgor00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
NMQ04_04360
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rgor03400
]
NMQ04_04360
Enzymes [BR:
rgor01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
NMQ04_04360
DNA repair and recombination proteins [BR:
rgor03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
NMQ04_04360
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
Big_4
Motif
Other DBs
NCBI-ProteinID:
UTT49444
LinkDB
All DBs
Position
924541..926862
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AA seq
773 aa
AA seq
DB search
MPTRTIDGHRITLTNLDKVLYPSTGTTKGEVVEYYEAIAEAMLPHIAGRATTRNRWPNGV
GGQSFFEKNLPDHAPAWIERRTLHHKDRRVTYPLFDSVAGLVWLAQQAALELHVHQWRFD
GEKAGPATRIVFDLDPGPGVGLAECAEVARHVRDTVSELGWDAYPVTSGSKGIHLYVPLD
RVLSSAGASKVAKQVARNLETTLPGLVTATMAKSAREGKVFVDWSQNNSSKTTVAPYSLR
GRDEPWVAAPRSWDELDDPDLSQLQFRDVLARIDELGDLLAGLDPPLGGGTASGGDALDT
YRGKRDAAHTPEPVPDRVPDDGPGNRFVIQEHHARRLHYDLRLERDGVLASWAVPKNLPE
TSGRNNLAVRTEDHPIEYLTFHGTIPKGEYGAGSMTVWDTGTYDTEKWRDDEVIVRFHGE
RIEGRYALIRTEKNQWLAHRMKDQAEPIPEPSSDGGPSGSKVFPHDLAPMLATPGDVSDL
DAEHWAFEGKWDGYRAIAEIEDGTVRLRSRSGRDVTGDYPKLVELATILDGHRAVLDGEI
VAVDRSGVTSFSMLQRGVNYEYRVFDVLYLDGVSLLRKTYDDRRRVLEALAAATDGLIVP
DLLPGDGPDALDRSRAKNWEGVVAKRRDSVYLPGKRGAGWIKSKNWLTQTVVLGGYRRGR
GNRASTFGSLLLGVYDDGEFVYVGKVGTGFDAETLLSVAKTMKGHTSRTNPFANEVPAAE
RRDAVWLRPELVGEVRFGGWTEGDRVRHASWRGLRDDVDASSVVREEEAGAGS
NT seq
2322 nt
NT seq
+upstream
nt +downstream
nt
atgccgacccggacgatcgacggtcaccgcatcaccctgaccaacctcgacaaggtgctg
tatccgagcaccgggacgacgaagggtgaggtcgtcgagtactacgaagcgatcgccgag
gcgatgctgccccacatcgccggccgggccacgacccgcaaccggtggccgaacggcgtc
ggtggacagtccttcttcgagaagaaccttccggaccacgcaccggcatggatcgagcgt
cgcactctgcaccacaaggaccggcgggtcacctacccgctgttcgattcggtcgccgga
ctggtctggctcgcacaacaggcagccctcgaactccacgtccaccagtggcgtttcgac
ggagagaaggccggacccgcgacccgcatcgtcttcgatctcgaccccgggcccggggtg
ggcctggccgagtgcgcggaggtcgcccgccacgtgcgcgacaccgtctcagaactcggg
tgggacgcctatcccgtgaccagtggcagcaaggggatacacctgtacgttccgctcgac
cgggtgttgtcctcggcgggggcgtcgaaggtggcgaagcaggtcgcacgcaatctcgag
accacccttcccggcctggtgaccgcgacgatggcgaaatccgcgcgcgaaggcaaggtc
ttcgtcgactggagtcagaacaacagttccaagacgacggtggctccgtactcgctgcgc
ggtcgcgacgagccgtgggttgcagccccgcgtagctgggacgaactcgacgatcccgat
ctctcgcaactgcagttccgcgacgtgctcgctcgtatcgacgagctcggggacctgctc
gccggactggatccgccgctcggcggcggcactgcgtccggcggcgacgccctggacacc
taccgcggcaagcgcgacgcggcgcacacccccgaacccgtgcccgaccgcgtcccggac
gacggtcccggcaacaggttcgtcatccaggaacaccatgcgcgtcgcctgcactacgac
ctgcggctcgaacgcgacggtgtgctggcctcctgggcggtgccgaagaacctgccggag
acctccgggcgcaacaacctggcggtacggaccgaggatcatcccatcgagtacctgacc
ttccacgggacgatcccgaagggtgaatacggtgccggcagcatgaccgtgtgggacacc
ggcacctacgacaccgagaagtggcgggacgacgaggtgatcgtccgtttccacggcgag
cggatcgagggacggtacgcgctgatccgcaccgagaagaaccagtggctcgcgcatcgc
atgaaagaccaggcggagccgatccccgagccttcgtccgacggcgggccgtcggggtcg
aaggtcttcccgcacgacctggcgccgatgctcgcgacccccggtgacgtctcggatctc
gacgccgaacactgggcgttcgaaggcaaatgggacggataccgcgcgatcgcggagatc
gaggacggcacggtgaggctccgcagtagatccggacgcgatgtcaccggcgactatccg
aagctcgtcgaactcgcgacgatcctcgacggtcaccgggcggtgctcgacggggagatc
gtcgcggtggaccgttccggcgtgacgagtttctcgatgctgcagcgcggcgtgaactac
gagtaccgcgtgttcgatgtgctgtatctcgacggggtctcgctgctgcgcaagacctac
gacgatcgccgccgggtcctcgaggcgctcgccgccgcgacggacggactgatcgtcccc
gatctgctcccgggtgacggacccgacgctctcgaccgcagccgggcgaagaactgggag
ggcgtggtcgcgaagcgccgtgactccgtatacctgccgggcaaacgcggagcggggtgg
atcaagtccaagaactggctcacccagaccgtcgtgctcggaggatatcggcgcggccgc
ggcaatcgcgcctccaccttcggatccctgttgctcggcgtctacgacgacggcgagttc
gtctacgtcggcaaggtggggaccggtttcgacgccgagacccttctgtcggtggcgaag
accatgaaggggcacacgagtcgtacgaacccgttcgcgaacgaggtgccggccgccgaa
cgccgcgatgcggtgtggctgcggcccgaactcgtgggggaagtgcggttcgggggatgg
acggaaggagaccgtgtgcggcacgcgagctggcgcggtctgcgcgacgacgtcgacgcg
tcgagcgtggtgcgagaagaggaagcaggcgccggctcctga
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