Rhodococcus gordoniae: NMQ04_05040
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Entry
NMQ04_05040 CDS
T08682
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
rgor
Rhodococcus gordoniae
Pathway
rgor03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rgor00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
NMQ04_05040 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rgor03400
]
NMQ04_05040 (mfd)
Enzymes [BR:
rgor01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NMQ04_05040 (mfd)
DNA repair and recombination proteins [BR:
rgor03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
NMQ04_05040 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
DEAD
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
LSDAT_prok
UB2H
AAA_22
DUF3638
RecG_dom3_C
IstB_IS21
Motif
Other DBs
NCBI-ProteinID:
UTT49570
LinkDB
All DBs
Position
1057296..1060949
Genome browser
AA seq
1217 aa
AA seq
DB search
MSAVPPAAVPLSGLARIALADHRLSRIGDLAGSAEQEIVAPPSARPFVAAALAEKTPLLV
VTATGREADDLTAELTEMLGDSVAQFPSWETLPHERLSPSADTVGRRLHLLRRLARPDDR
DLGPELGVVVATVRSLVQPMAPGLGEIDPVTLRVGTEHDFEELVERLVELAYTRVDMVGK
RGEFAVRGGILDIFPPTADHPVRVEFWGDEVTELRCFSVADQRSITEVDVPVLIAPPCRE
LLLTEEVKARAAQLAQDNPADAALVEMLDKMAGGIPVEGMEALLPVLQSGELQLLTDVLP
AGAHVLICDPEKVRTRASDLARTGQEFLEASWTAASLGGAVPLDTSNLNGVDGKKLDLGE
SAYRSLRQVREAAQAAGTPWWTLSPLASGSESEIVLDVQPAPEVRGSEDLLSMLFVNLRA
HVTAGGRAVIVVAGTGTGQRVLERLKENEVPAAKLEPGSEPVRGQVGVMRGCLHEGVVLP
GNDDNVVPGLVVVTEADLTGNRVVTEGRKTPVKRRNQVDPLALNAGDFVVHDQHGIGKFV
EMVERTVGGARREYLVIEYAPGKRGQPGDKLFVPMEQLDQLSRYVGGELPSVSKLGGSDW
ANTKRKARKAVREIAGELVRLYAARQASPGHAFAPDSPWQKEMEDAFPFTETQDQLTVIS
EVKADMEKPVPMDRVVIGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLAQQHLQTFT
ERMAAFPVTVKGLSRFTDAAESRAIIEGMADGTVDIVVGTHRLLQTGVRWKDLGLVVVDE
EQRFGVEHKEHIKALRTHVDVLTMSATPIPRTLEMSMAGIREMSTILTPPEERHPILTYV
GAYNDKQVAAAIRRELLRDGQVFYVHNRVSSIDKAAKRLRDLVPEARVAVAHGQMNEDTL
EKTVQGFWQREFDVLVCTTIVETGLDISNANTLIVERADALGLSQLHQLRGRVGRSRERG
YAYFLYPAEKPLTETAYDRLATISQNSDLGAGMAVAMKDLEIRGAGNVLGGEQSGHVAGV
GFDLYVRLVGEAVEAYRAAADGRTVTTDEAPKEVRVDLPVDAHIPADYVASDRLRLEAYR
KLAAANDDAAIATVVHELVDRYGPLPEEVQRLVSVGRLRLLCREYGLEEVAVTGTQIRIS
PMELPDSKQMRLKRLYPGAQYRATSGLVQLPIPRTGGVGSDRVRDVALLQYIADFLLALD
GKPQGMVDLNSAATVNA
NT seq
3654 nt
NT seq
+upstream
nt +downstream
nt
ttgtctgctgtgcccccggccgctgtcccactgtccggattggcgcggatcgcgctggcc
gaccaccgactgagcaggatcggcgatctcgccggttccgccgaacaggagatcgtcgca
ccgccctccgcccggccgttcgtcgcggcggcgctggccgagaagacgccgctgctcgtg
gtcaccgccaccggacgcgaggccgacgatctcaccgccgaactcaccgagatgctcggc
gactcggtcgcacagttcccctcgtgggagaccctgccgcacgagcgcctgtctccgagc
gccgacaccgtgggccgtcgcctgcacctcctgcgtcgcctcgcccgtcccgatgatcgc
gacctcggacccgaactcggggtcgtggtcgccaccgtgcggtcgctggtgcagccgatg
gcacccggactcggcgagatcgatcccgtcaccctgcgggtcggcaccgaacacgacttc
gaggagctcgtcgagcgactcgtcgaactcgcctacacccgggtcgacatggtcggcaag
cgcggcgagttcgcggtgcgcggcggcattctcgacatcttccccccgaccgccgaccat
ccggtccgcgtcgaattctggggcgacgaggtcaccgaactgcgatgtttctccgtcgcc
gaccagcggtcgatcaccgaggtcgacgtgccggtgctcatcgcgccgccgtgccgcgaa
ctgctgctcaccgaggaggtcaaggcccgggccgcgcagctcgcccaggacaacccggcc
gacgcggcgctcgtcgagatgctcgacaagatggccgggggcattcccgtcgagggcatg
gaagcgttgctgccggtgctgcagtccggcgagctgcagttgctcaccgacgttctgccc
gccggcgcgcacgtgctgatctgcgatccggagaaggtccgcacccgggcgagcgatctc
gcccgcaccgggcaggagttcctcgaggcgtcgtggacggcggcttcgctcggtggtgcg
gtgccgctcgacacctcgaatctcaacggagtggacgggaagaagctcgatctcggcgag
tcggcctaccgatcgctgcgccaggtgcgcgaggccgcgcaggcggcagggacaccgtgg
tggacgctgagcccgctcgcctcgggttccgagagcgagatcgtcctcgatgtacagccg
gcacccgaagtccgcggttccgaggacctgttgtcgatgctgttcgtgaacctgcgcgcg
cacgtcaccgccggtgggcgtgcggtgatcgtcgttgccggcacgggaaccgggcagcgc
gtcctcgagcggctgaaggagaacgaggtccccgccgcgaaactcgaacccggctccgaa
ccggtgcgcgggcaggtcggtgtcatgcgcggctgtctgcacgagggcgtggtgcttccc
ggcaacgacgacaatgtggtgccgggcctggtcgtcgtcaccgaagccgacctcaccggc
aaccgcgtcgtcaccgagggacgcaagacgcccgtcaagcgccgcaaccaggtcgacccg
ctcgccctgaacgccggcgatttcgtcgtccacgaccagcacggcatcggcaagttcgtc
gagatggtcgaacggaccgtcggtggcgcccgccgcgaatacctcgtcatcgagtacgca
cccggcaagcgcggccagcccggcgacaaactgttcgttccgatggaacaactcgaccag
ctctcccgttacgtcggtggcgaactgccgtccgtcagcaagctcggcggatccgactgg
gccaacaccaaacgcaaggcccgcaaggcggttcgggagatcgccggcgaactcgtgcgg
ttgtacgcggcgcggcaggcctcacccggccacgccttcgcgcccgactcgccgtggcag
aaggagatggaggacgccttccccttcaccgagacacaggaccagctcacggtgatctcc
gaggtcaaggccgacatggagaagccggtaccgatggaccgcgtcgtgatcggcgacgtc
ggctacggcaagaccgagatcgccgtgcgcgcggcgttcaaggccgtgcaggacggcaag
caggtcgcggtgctcgtccccacgactctgctcgcgcagcagcatctgcagaccttcacc
gagcggatggcggccttccccgtgacggtcaagggattgagccggttcaccgacgcggcc
gagtcgcgcgcgatcatcgagggcatggccgacggcaccgtcgacatcgtcgtcggcacc
caccgcctgctgcagaccggcgtccgctggaaggacctcggtctcgtggtcgtcgacgag
gaacagcgtttcggcgtcgagcacaaggaacacatcaaggcgctgcgcacccacgtcgac
gtgctcacgatgtcggccacgccgatccctcgcaccctcgagatgagtatggccgggatc
cgcgagatgtcgaccatcctcactccgcccgaggaacggcatccgatcctcacctatgtg
ggcgcgtacaacgacaagcaggtcgccgcggccatccggcgagagttgttgcgcgacggt
caggtcttctacgtccacaaccgggtgagctcgatcgacaaggccgccaaacggcttcgc
gacctcgttccggaggcgcgggtcgcggtggcgcacgggcagatgaacgaggacacgctc
gagaagacggtgcaaggcttctggcagcgcgagttcgacgtgctggtgtgcaccacgatc
gtcgagaccggtctcgacatctccaatgccaacaccctcatcgtcgaacgggcggatgcg
ctcggcctgtcgcagctgcaccagttgcgcggacgtgtcgggcgttcgcgggagcgcggc
tacgcgtacttcctgtacccggcggagaagccgctgacggagacggcctacgaccggctc
gccacgatctcgcagaactccgatctcggcgcgggtatggccgtcgccatgaaggatctc
gagatccgcggtgccggaaacgttctcggcggcgagcagtccggtcacgtcgcgggtgtc
ggcttcgacctgtacgtgcggctcgtcggtgaggccgtcgaggcatacagggcagcagca
gacggccggaccgtcaccaccgacgaagcgcccaaggaggtgcgggtcgaccttcccgtc
gacgcgcacatccccgccgactacgtcgcgtccgatcggttgcgtctcgaggcgtaccgc
aagctcgcggccgcgaacgacgatgcggcgatcgccacggtcgtccacgaactcgtcgac
cggtacggcccgctgcccgaggaggttcagcggctcgtgtccgtcggcaggctccggctg
ctgtgccgcgagtacggcctcgaggaggtcgccgtcaccggaacccagatccggatctcg
ccgatggaactgcccgactcgaagcagatgcggctcaagcggttgtatccgggcgcgcag
taccgtgcgaccagcggcctcgtccagttgccgatcccacggaccggcggtgtcggatcg
gatcgggtgcgggacgtggcgttgctgcagtacatcgccgacttcctgctggcgctcgac
ggcaaaccgcaagggatggtggacctgaacagcgcggccacggtgaatgcatga
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