KEGG   Rhizobium grahamii: FZ934_09790
Entry
FZ934_09790       CDS       T06285                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
rgr  Rhizobium grahamii
Pathway
rgr03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:rgr00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    FZ934_09790 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:rgr03400]
    FZ934_09790 (ligD)
Enzymes [BR:rgr01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     FZ934_09790 (ligD)
DNA repair and recombination proteins [BR:rgr03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     FZ934_09790 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_C DNA_ligase_A_M RNA_ligase DNA_primase_S SPOR mRNA_cap_enzyme
Other DBs
NCBI-ProteinID: QFY60689
UniProt: A0A5Q0CAI2
LinkDB
Position
complement(1996529..1999036)
AA seq 835 aa
MPLETYQAKRNFKVSPEPRGARKPAAATDNVLSFVVQKHDATRLHYDFRLEMDGVLKSWA
VTRGPSLNPDEKRLAVHVEDHPLEYGDFEGIIPKGQYGGGTVIVWDRGTWAPHGDIHKAY
KKGHIEFDLDGEKLKGRWHLVRMHGKPGESRENWLLIKAEDEEARHKGDILKQRPESAKT
GRKIEQVAKNPDATWNSRPNGKAETTDKPAAKRVSSFKRGWPDGAHKAEMPDFVEPELAK
LKASPPGGEGWIHEIKFDGYRLQIRIENGHVVMLTRNGLDWTEKFGEPILKAFAKLPLKT
AILDGELVVEQANGASDFSALQSDLSEGRSDRFKFYAFDLLYLDGHDIREAKLLDRKRVL
ETLIAEDDELLRFSMHFSEKGSVVLEHARNLALEGIISKREDSAYTSGRSGDWVKSKCSK
RQELVIGGYVPSTATKQAIGSLAMGYYEGGKLMHAGRVGTGYSVTLAQSLYEDLSKIEQK
KSPFDNALSADERRGLVYVKPKLVAEIEFQAWSSDHKLRHAAFRGLRDDKPAGEVTLEAD
TKPTIETPQSDVSLTHPDRIYWPDEGVTKQGLADYYAQVWQFIRPFVVQRPLALLRCPDG
IGGQKFFQKHAWKGMNAHIEQIVDPKDRGGEKLLRIADFDGLVALVQSAVLEIHPWGSTT
ANWEKPDIITMDLDPADDVSWGEVIAAAQELKQRLEASGLAAFVKTSGGKGLHVVTPLAP
KANWVQVKAFAKALADSMSKDSPDKYLATATKAKRNGKIFVDYLRNGRGNTAVAAYSPRA
RKGAPVSMPLGWEELTDDIGPAYFTIANSPIRLQTLRTDPWAGFFDAALPLQKLK
NT seq 2508 nt   +upstreamnt  +downstreamnt
atgccgcttgagacctatcaggcgaagcgcaacttcaaggtcagtccggagccgcgcggg
gcgcgcaagccggcggcagccacggacaatgtcttgagttttgtcgtgcagaagcacgat
gcgacgcggctccactatgatttccggctggaaatggatggcgtcctgaaaagctgggcg
gttacgcgcggccccagcctcaatcccgacgagaagcgattggccgtccatgtcgaggat
catccgctcgaatacggggatttcgaagggatcatcccgaagggtcagtatgggggcggg
actgtcattgtctgggatcgcggcacatgggcgccgcatggcgacattcacaaggcttac
aagaaaggccacatcgaattcgatctcgacggcgagaagctgaaggggcgctggcacctc
gtgcgaatgcatggcaagccgggcgaaagccgggagaactggctgctgataaaggccgag
gacgaagaggcccgacacaagggagacatcctgaagcagcggccggagtcggccaagacc
ggtcgcaagatcgagcaggttgccaagaatcctgacgcgacatggaattcgcgaccgaat
ggcaaggcggagacgactgataaacctgccgccaagcgcgtctcatcgttcaagcgcgga
tggccggatggagcgcataaggccgaaatgccggatttcgtcgaaccggagctggcgaag
ctcaaggcttcgccgcccggcggcgaggggtggatccacgaaatcaagttcgacggctac
cggctgcagatcaggatagagaacggccacgtcgtgatgctgacccgcaacgggctggac
tggaccgaaaagtttggcgagccaatcctgaaggcctttgcgaagctgccgctcaagacg
gcgatactcgacggtgagcttgtcgtcgaacaggcgaacggggcatcggacttttccgcc
ttgcaaagcgatctcagcgaaggccgctccgaccgcttcaagttctatgctttcgatctc
ctgtatctcgatggccacgacatccgcgaagccaagctgctcgatcgcaaacgtgtgctt
gagacgctgattgccgaggatgacgagctcttgcggttcagcatgcatttctcggagaaa
ggcagcgtcgtgctcgagcatgcccgcaacctcgccctggaaggcatcatctccaagcgg
gaggatagcgcctatacctcgggtcgctccggcgattgggtgaagtccaagtgctcgaag
cggcaggaactggtgatcggcggctacgtgccgtcgaccgcaaccaaacaggcgatcggt
tctctggccatgggctattacgagggcggtaagttgatgcatgccggccgcgtcgggacg
ggctacagcgtcacgcttgctcaatctctctatgaggacctatcgaagatcgaacagaag
aagagccctttcgataacgcgttgagtgcggatgagcggcgtggtcttgtctacgtcaag
cccaagctggtggcagagatcgagtttcaggcatggtcgtcggaccataaactgcgtcac
gcggcttttcgcggactgcgcgacgacaagccggcgggagaggtcacattggaagcagac
acaaagccaacgatcgaaacgcctcaatcagacgtgtcgctcacgcatccggacagaatc
tactggcccgacgaaggtgtcaccaagcagggacttgccgactattatgcgcaggtttgg
cagttcatccggccgttcgtcgttcagcgcccgctggcattgctgcggtgtcccgatggg
attggcggtcagaaattcttccagaaacacgcctggaaaggcatgaacgcgcacatcgag
cagatcgtcgatccgaaggatcgcggtggagaaaagctgctccggattgccgatttcgac
gggcttgtcgctctcgtgcagtcggccgttctggagatccacccctggggttcgacgacc
gccaattgggagaagcccgatatcatcacgatggacctcgatccagctgacgatgtttcc
tggggtgaggtgattgcggcagcgcaggagctgaagcagcgcctggaagcgagtggactt
gcggccttcgtcaagacctcgggtgggaaggggctgcatgtggtcacgccgctggcgccg
aaggccaattgggtgcaggtcaaggcattcgcgaaggcattggccgattccatgtccaag
gacagtcccgacaaatacctcgcaaccgccaccaaagccaaacgaaacggaaagatcttc
gtcgactatctacgcaacggacgcggcaataccgcggtggctgcctattcgccgcgcgcc
agaaaaggcgcccccgtttcgatgccgctcggttgggaagaactgaccgatgatatcggg
ccggcttatttcacgattgccaattcgcctatccggttgcagaccctgcggaccgatcca
tgggccgggtttttcgatgcagcattgccgttgcagaagctgaagtag

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