Rhizobium grahamii: FZ934_09790
Help
Entry
FZ934_09790 CDS
T06285
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
rgr
Rhizobium grahamii
Pathway
rgr03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
rgr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
FZ934_09790 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rgr03400
]
FZ934_09790 (ligD)
Enzymes [BR:
rgr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
FZ934_09790 (ligD)
DNA repair and recombination proteins [BR:
rgr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
FZ934_09790 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
RNA_ligase
DNA_primase_S
SPOR
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
QFY60689
UniProt:
A0A5Q0CAI2
LinkDB
All DBs
Position
complement(1996529..1999036)
Genome browser
AA seq
835 aa
AA seq
DB search
MPLETYQAKRNFKVSPEPRGARKPAAATDNVLSFVVQKHDATRLHYDFRLEMDGVLKSWA
VTRGPSLNPDEKRLAVHVEDHPLEYGDFEGIIPKGQYGGGTVIVWDRGTWAPHGDIHKAY
KKGHIEFDLDGEKLKGRWHLVRMHGKPGESRENWLLIKAEDEEARHKGDILKQRPESAKT
GRKIEQVAKNPDATWNSRPNGKAETTDKPAAKRVSSFKRGWPDGAHKAEMPDFVEPELAK
LKASPPGGEGWIHEIKFDGYRLQIRIENGHVVMLTRNGLDWTEKFGEPILKAFAKLPLKT
AILDGELVVEQANGASDFSALQSDLSEGRSDRFKFYAFDLLYLDGHDIREAKLLDRKRVL
ETLIAEDDELLRFSMHFSEKGSVVLEHARNLALEGIISKREDSAYTSGRSGDWVKSKCSK
RQELVIGGYVPSTATKQAIGSLAMGYYEGGKLMHAGRVGTGYSVTLAQSLYEDLSKIEQK
KSPFDNALSADERRGLVYVKPKLVAEIEFQAWSSDHKLRHAAFRGLRDDKPAGEVTLEAD
TKPTIETPQSDVSLTHPDRIYWPDEGVTKQGLADYYAQVWQFIRPFVVQRPLALLRCPDG
IGGQKFFQKHAWKGMNAHIEQIVDPKDRGGEKLLRIADFDGLVALVQSAVLEIHPWGSTT
ANWEKPDIITMDLDPADDVSWGEVIAAAQELKQRLEASGLAAFVKTSGGKGLHVVTPLAP
KANWVQVKAFAKALADSMSKDSPDKYLATATKAKRNGKIFVDYLRNGRGNTAVAAYSPRA
RKGAPVSMPLGWEELTDDIGPAYFTIANSPIRLQTLRTDPWAGFFDAALPLQKLK
NT seq
2508 nt
NT seq
+upstream
nt +downstream
nt
atgccgcttgagacctatcaggcgaagcgcaacttcaaggtcagtccggagccgcgcggg
gcgcgcaagccggcggcagccacggacaatgtcttgagttttgtcgtgcagaagcacgat
gcgacgcggctccactatgatttccggctggaaatggatggcgtcctgaaaagctgggcg
gttacgcgcggccccagcctcaatcccgacgagaagcgattggccgtccatgtcgaggat
catccgctcgaatacggggatttcgaagggatcatcccgaagggtcagtatgggggcggg
actgtcattgtctgggatcgcggcacatgggcgccgcatggcgacattcacaaggcttac
aagaaaggccacatcgaattcgatctcgacggcgagaagctgaaggggcgctggcacctc
gtgcgaatgcatggcaagccgggcgaaagccgggagaactggctgctgataaaggccgag
gacgaagaggcccgacacaagggagacatcctgaagcagcggccggagtcggccaagacc
ggtcgcaagatcgagcaggttgccaagaatcctgacgcgacatggaattcgcgaccgaat
ggcaaggcggagacgactgataaacctgccgccaagcgcgtctcatcgttcaagcgcgga
tggccggatggagcgcataaggccgaaatgccggatttcgtcgaaccggagctggcgaag
ctcaaggcttcgccgcccggcggcgaggggtggatccacgaaatcaagttcgacggctac
cggctgcagatcaggatagagaacggccacgtcgtgatgctgacccgcaacgggctggac
tggaccgaaaagtttggcgagccaatcctgaaggcctttgcgaagctgccgctcaagacg
gcgatactcgacggtgagcttgtcgtcgaacaggcgaacggggcatcggacttttccgcc
ttgcaaagcgatctcagcgaaggccgctccgaccgcttcaagttctatgctttcgatctc
ctgtatctcgatggccacgacatccgcgaagccaagctgctcgatcgcaaacgtgtgctt
gagacgctgattgccgaggatgacgagctcttgcggttcagcatgcatttctcggagaaa
ggcagcgtcgtgctcgagcatgcccgcaacctcgccctggaaggcatcatctccaagcgg
gaggatagcgcctatacctcgggtcgctccggcgattgggtgaagtccaagtgctcgaag
cggcaggaactggtgatcggcggctacgtgccgtcgaccgcaaccaaacaggcgatcggt
tctctggccatgggctattacgagggcggtaagttgatgcatgccggccgcgtcgggacg
ggctacagcgtcacgcttgctcaatctctctatgaggacctatcgaagatcgaacagaag
aagagccctttcgataacgcgttgagtgcggatgagcggcgtggtcttgtctacgtcaag
cccaagctggtggcagagatcgagtttcaggcatggtcgtcggaccataaactgcgtcac
gcggcttttcgcggactgcgcgacgacaagccggcgggagaggtcacattggaagcagac
acaaagccaacgatcgaaacgcctcaatcagacgtgtcgctcacgcatccggacagaatc
tactggcccgacgaaggtgtcaccaagcagggacttgccgactattatgcgcaggtttgg
cagttcatccggccgttcgtcgttcagcgcccgctggcattgctgcggtgtcccgatggg
attggcggtcagaaattcttccagaaacacgcctggaaaggcatgaacgcgcacatcgag
cagatcgtcgatccgaaggatcgcggtggagaaaagctgctccggattgccgatttcgac
gggcttgtcgctctcgtgcagtcggccgttctggagatccacccctggggttcgacgacc
gccaattgggagaagcccgatatcatcacgatggacctcgatccagctgacgatgtttcc
tggggtgaggtgattgcggcagcgcaggagctgaagcagcgcctggaagcgagtggactt
gcggccttcgtcaagacctcgggtgggaaggggctgcatgtggtcacgccgctggcgccg
aaggccaattgggtgcaggtcaaggcattcgcgaaggcattggccgattccatgtccaag
gacagtcccgacaaatacctcgcaaccgccaccaaagccaaacgaaacggaaagatcttc
gtcgactatctacgcaacggacgcggcaataccgcggtggctgcctattcgccgcgcgcc
agaaaaggcgcccccgtttcgatgccgctcggttgggaagaactgaccgatgatatcggg
ccggcttatttcacgattgccaattcgcctatccggttgcagaccctgcggaccgatcca
tgggccgggtttttcgatgcagcattgccgttgcagaagctgaagtag
DBGET
integrated database retrieval system