Piscinibacter gummiphilus: A4W93_03945
Help
Entry
A4W93_03945 CDS
T04831
Symbol
ligD
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
rgu
Piscinibacter gummiphilus
Pathway
rgu03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
rgu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
A4W93_03945 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rgu03400
]
A4W93_03945 (ligD)
Enzymes [BR:
rgu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
A4W93_03945 (ligD)
DNA repair and recombination proteins [BR:
rgu03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
A4W93_03945 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
ARN19135
UniProt:
A0A1W6L4B4
LinkDB
All DBs
Position
complement(879574..882048)
Genome browser
AA seq
824 aa
AA seq
DB search
MPATHTDPLGRYWAKRDFSKTPEPRGVRAKAGKALSFVVQKHDATRLHYDFRLELDGVLL
SWAVPKGPSYDPADKRMAVRTEDHPMSYADFEGTIPPGQYGAGHVIVWDRGTWTPHGDPR
ASLAAGKLSFELQGEKLEGVWELVRLKRPDESKETWLLFKKRDEHARPHADYDVVIAKPD
SVMTSKPPASTARKKAPKRAPLPETMSPQLATLATGVPSSGTWSYELKYDGYRVMTRFER
GVPKLVTRGGHDWTARLPELSAALRELGVKSGWLDGELVVLNDNGVPDFNALQNAFDRQR
TGRIVYFLFDAPFLEGRDLREEPLSARRAALKAVLDERGTDRVRFSPDIDADPHSILASA
CAMKLEGVIAKRTDAPYESRRSTSWLKLKCQQRQEFVIVGFTARKNVDGEIGSLLLAVHD
ASGTLKPVGSVGTGWDTDTSRALWKELTAIEASKAPFESGGPAKRSRWSRRPGAVDRWVK
PTRIAEVNFGEWTPDQQIRHAVFISLRTDKPVHQITREKAVDAPAIVKSSVKVSNPERVI
DPSTGTTKLDLVRFYEAIAPHLLPHLKGRPVSLVRGPEGVGGELFFQKHLGKVHIDGIKE
LPVSRWEGHEPLMEVNTAKALAASAQMNTVEFHTWNTMSRHIGKPDRIVFDVDPGEGVGW
AMVQEAAILTRALLTELGLVSWLKTSGGKGLHVVVPIAPRLDWDTVKAFSRDVVAHMAHH
IPERFVVKSGPANRVGKIFIDYLRNGHGATTAAAFSARARPGLGVSMPISWDELPDVKSG
SQWTVANTLDHLSFRKVDPWADYAGTKQALAAAIRKLEKAQRAV
NT seq
2475 nt
NT seq
+upstream
nt +downstream
nt
atgccggccacgcacaccgacccgctcggccgctactgggccaagcgcgacttctcgaaa
acgcccgaaccgcgcggcgtgcgggccaaggccggcaaggcgctgtcgttcgtggtccag
aaacacgacgccacccgcctgcactacgacttccgcctcgaactcgacggcgtgctgctg
tcgtgggcggtgccgaagggcccgtcgtacgaccccgcggacaagcgcatggcggtccgc
accgaggaccacccgatgtcgtacgccgacttcgagggcacgatcccgcccggccagtac
ggcgcgggccacgtgatcgtgtgggaccgcggcacgtggactccgcacggcgacccgcgc
gcgagccttgcggccggcaagctgtcgttcgaactgcagggcgagaagctcgaaggcgtg
tgggaactggtgcggctgaaacggcccgacgaaagcaaggaaacctggctgcttttcaag
aagcgcgacgaacacgcgcgcccgcacgccgactacgacgtggtgatcgcgaagcccgac
agcgtcatgacgtcgaagccgcccgcgtccaccgctcgcaagaaggcgccgaagcgcgcc
cccctgcccgagacgatgtctccgcaactggccacgctcgccaccggcgtgccgtcgtcc
ggcacctggtcgtacgaactgaagtacgacggctaccgcgtgatgacccgtttcgagcgc
ggggtgccgaagctcgtgactcgtggcggccacgactggaccgcgcggctgcccgagctg
tcggccgcgctgcgcgaactcggcgtgaagagcggctggctcgacggcgagctggtggtg
ctcaacgacaacggcgtgcccgacttcaacgcgctccagaacgcgttcgaccgccagcgc
accgggcgcatcgtctacttcctgttcgacgccccgttcctggaaggccgcgacctgcgc
gaggagccgctctcggcgcggcgtgccgcactgaaggccgtgctcgacgaacgcggcacc
gaccgtgtgcgcttcagccccgacatcgatgccgacccccacagcatcctcgcgtccgcc
tgcgcgatgaagctcgaaggcgtgatcgccaagcgcaccgacgcgccctacgagtcgcgc
cgcagcaccagctggctcaagctcaagtgccagcagcggcaggagttcgtgatcgtgggg
ttcaccgcgcgcaagaacgtcgacggcgagatcggcagcctgctgctggccgtgcacgac
gcgtcgggaaccctcaagcccgtgggcagcgtgggcacgggctgggacaccgacacgtcg
cgtgcgttgtggaaggaactgaccgcgatcgaggcctcgaaggccccgttcgaatccggc
ggccccgccaaacgcagccgctggtcacgccgccccggcgccgtggaccgttgggtgaaa
cccacccgcatcgccgaggtgaacttcggcgagtggaccccggaccagcagatccgccac
gccgtcttcatcagcctgcgcaccgacaagccggtgcaccagatcacgcgggagaaggcc
gtggatgcaccagccatcgtcaagtcctccgtcaaggtgtcgaaccccgaacgggtcatc
gacccgagcaccggcaccaccaagctcgacctcgtgcgcttctacgaggccatcgcgcca
cacctgctgccgcacctgaagggtcggccggtgtcgctggtgcgcggccccgagggcgtg
ggcggcgagctgttcttccagaagcacctgggcaaggtgcacatcgacggcatcaaggag
ctgccggtgtcgcggtgggaaggccacgagccgctgatggaggtgaacacggcgaaggcg
ctggccgcgtccgcgcagatgaacaccgtggagttccacacctggaacacgatgtcgcgc
cacatcggcaaacccgaccgcatcgtgttcgacgtggaccccggcgaaggtgtcgggtgg
gcgatggtgcaggaggccgcgatcctcacgcgcgcgctgctgaccgaactgggcctcgtg
tcgtggctcaagaccagcggcggcaagggcctgcacgtcgtggtgcccatcgcgccccgg
ctcgactgggacaccgtcaaggcgttctcgcgcgacgtggtggcccacatggcccaccac
atccccgagcgcttcgtcgtgaagagcggccccgccaaccgcgtgggcaagatcttcatc
gactacctgcgcaacggccacggcgccaccaccgcagcggcgttcagcgcccgcgcacgg
ccggggctgggggtgtcgatgccgatctcgtgggacgaactgcccgacgtgaaaagcggc
agccagtggaccgtggcgaacacgctcgaccacctgtcgttccgcaaggtcgacccgtgg
gccgactacgccggaacgaaacaggcgctcgcagccgccatcaggaagctcgagaaggct
cagcgcgccgtgtag
DBGET
integrated database retrieval system
