Rhodococcus jostii: RHA1_ro05048
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Entry
RHA1_ro05048 CDS
T00382
Name
(GenBank) DNA ligase (ATP)
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
rha
Rhodococcus jostii
Pathway
rha03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
rha00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
RHA1_ro05048
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rha03400
]
RHA1_ro05048
Enzymes [BR:
rha01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
RHA1_ro05048
DNA repair and recombination proteins [BR:
rha03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
RHA1_ro05048
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
ABG96829
UniProt:
Q0S6K7
LinkDB
All DBs
Position
5336375..5338675
Genome browser
AA seq
766 aa
AA seq
DB search
MYRRREARVATAGTRQLTVDGHRLSLTNLGKVLYPESETTKGEVIDYYTRIAPAMLPHVV
DRPATRKRWPNGVDSEPFFEKNLAASAPAWLERRALEHSDRSVHYPLLNSVAALAWAGQQ
AALELHVPQWRFDGPHRGPATRIVFDLDPGPGVGLVECAEVARAVRDLVANLGWTAYPVT
SGSKGIHLYVPLDRKLDGSGASTVAKQVATGLEKLRPELVTATMAKAVRAGKVFVDWSQN
NPSKTTIAPYSLRGRAQPYVAAPRSWDELDDPDLRQLRFEEVLERWESDGDLLAGLDPPI
ENDATLAEYRRKRDPGRTPEPMPDTVQPGEGNSFVIQEHHARRLHYDLRLEREGVLVSWA
VPKNVPTTTGENRLAVHTEDHPLEYLTFSGTIPKGEYGGGEMAIWDTGTYDTEKWRDDEV
IVQLHGEQVEGRFALIRTKGDQWLMHLMKDQTPGGSHTSELPRGLSPMLASPGTLDGLDA
DEWAFEGKWDGIRVIAEISGGELKLTSRAGNDKTRDYARLGWLADALGDHEVVLDGEVVA
FDERGVANFGLLQQGNEPHFLAFDVLYLDGVSLLRKKYTDRRRVLEALAAKVDDLVVPPQ
LHGSAQDALDESRGKGWEGVVAKRRESVYLPGKRGSSWIKVKNWRTQEAVIGGWRRGQGG
RSTGIGSVLLGVPEDGGLRYIGRVGTGFTERDLQELASTLGPLETDTSPFVEDLPTADRK
GAVWVTPTLVAEVRFMDWTGSKRLRHPSWRGLRDDKAPEDVEVEVS
NT seq
2301 nt
NT seq
+upstream
nt +downstream
nt
atgtatcggcggagggaggcgcgcgtggccactgcgggaacccggcaactgacggtcgac
ggacatcgcctgtccctgaccaatctcggcaaggtcctctacccggaatcggaaacgacg
aagggcgaggtcatcgactattacacgcggatcgcccccgccatgctcccgcacgtcgtc
gaccgccccgccacccgtaaacgctggcccaacggggtggacagcgagccgttcttcgag
aagaacctcgcggcctccgcaccggcgtggttggagcgccgtgcactcgagcactcggat
cggtcggtgcactatccgctcctgaactcggtcgcggccctggcgtgggcggggcagcag
gccgcactcgaactgcacgtgccgcagtggcggttcgacggaccacatcggggtcccgcc
acccggatcgtcttcgacctcgaccccggtcccggtgtgggcctggtcgaatgcgcggag
gtggcacgggccgtgcgcgacctggtcgcgaacctcggctggaccgcgtacccggtcacc
agcggcagcaagggtattcatctgtacgtgccgctcgaccggaagctggacggttcgggc
gcgtcgaccgtcgcgaagcaggtggcgacgggactggagaagctgcggcccgaactcgtc
accgccaccatggccaaggcggtgcgcgcgggaaaggtcttcgtcgactggagccagaac
aatccgtccaagaccaccatcgcgccgtattcgctgcgggggcgcgcccagccgtatgtc
gcggcgccgcggagctgggacgaactcgacgaccccgacctacggcagctgcggttcgag
gaagtgctcgaacggtgggagtcggacggcgacctgctcgccggactcgatccgccgatc
gagaacgacgccaccctcgccgagtaccgccgcaagcgtgatcccggacggacacccgag
ccgatgccggacacggtgcagccaggggagggcaacagcttcgtcatccaggaacatcac
gcccggcgtctccactacgatctgcggctcgaacgcgagggggtgctcgtgtcgtgggcg
gtgccgaagaacgtgccgacgacgacgggggagaaccggctcgcggtgcacaccgaggat
cacccgctcgaatacctcacgttctccgggaccatcccgaagggcgagtacggcggcggc
gagatggccatctgggacacgggaacgtatgacaccgagaagtggcgggacgacgaggtg
atcgtccagttgcacggcgagcaggtggagggccggttcgcgctgatccgcacgaagggc
gaccagtggctgatgcatctgatgaaggatcagaccccgggtgggtcgcacacgtccgaa
ctgccgcggggactgtcgccgatgctcgcgagccccggcaccctcgacggactggacgcc
gacgagtgggcgttcgaaggaaagtgggacgggatcagggtgatcgccgagatcagtggc
ggcgagctgaagctgacgagccgggcgggcaacgacaagacccgcgactacgcccgattg
ggttggctggcagacgctctcggcgaccacgaggtggtcctcgacggtgaagtggtcgcg
ttcgacgagcggggtgtcgcgaacttcggcctcctgcagcagggcaacgagccgcacttc
ctcgcgttcgacgtgctgtatctcgacggagtgtcgttgttacgcaagaagtacaccgac
cggcgccgcgtcctcgaagccctggcggccaaggtggacgacctggtcgttccgccgcaa
ctgcacgggtccgcgcaggacgctctggacgagagccgcggcaagggctgggaaggtgtc
gtggccaaacgccgcgagtcagtgtacttgccgggcaagcgggggtcgagctggatcaag
gtgaagaactggcgcacacaggaagccgtgatcggcgggtggcgccggggtcagggcggg
cggtccacgggaatcgggtcggtcctgctcggcgttcccgaggacggtgggctgcgctac
atcgggcgcgtcggaaccggcttcaccgaacgggatctgcaggaactcgcatctaccctg
gggccgctggaaacagacaccagtccgttcgtcgaagacctgcccaccgccgaccgcaag
ggggccgtgtgggtcaccccgacactggtggcggaggtgcggttcatggattggaccggc
tcgaagagactgcggcaccccagctggcgtgggctcagggacgacaaggcacccgaggac
gtcgaagtggaggtctcgtga
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