Rhodococcus jostii: RHA1_ro05760
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Entry
RHA1_ro05760 CDS
T00382
Name
(GenBank) transcription repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
rha
Rhodococcus jostii
Pathway
rha03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rha00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
RHA1_ro05760
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rha03400
]
RHA1_ro05760
Enzymes [BR:
rha01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RHA1_ro05760
DNA repair and recombination proteins [BR:
rha03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
RHA1_ro05760
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
IstB_IS21
AAA_22
DUF3638
RecG_dom3_C
UB2H
Motif
Other DBs
NCBI-ProteinID:
ABG97538
UniProt:
Q0S4J8
LinkDB
All DBs
Position
6189629..6193276
Genome browser
AA seq
1215 aa
AA seq
DB search
MSSPLIAAEPSSDTPLAGLAKIALGDAVIAQVTEALGRHHLDIVAPGPARPFVAAALAER
THLLLVTATGREADDLTAELREMIGDAVAQFPSWETLPHERLSPSADTVGRRVEVLRRLA
RPDDRSYGAPLQVIVTTVRSLVQPMAPGLGEIEPVTLRVGVEHDFDGLIQRLVEMAYTRV
DMVGKRGEFAVRGGILDLFSPTADHPVRVEFWGDEVTELRAFSVADQRSLPELDIDAVIA
PPCRELLLTEDVRDRAAQLAVDNQADAALVEMLDKMSAGIPVEGMEALLPVLRPGQLQLL
TDVLPESAHVLLCDPEKIRTRATDLVRTGQEFLEASWTAASIGGAAPLDTSVLRGDGIDL
GASAYRSLSQVRESAEARGLPWWTLSPLASGNGEELELAVTPAPQVRGSDDLLSELFVSL
RAHVTTGGRAVIVVAGAGTAHRVLERLREAEVPAAELAPGTEPPRGQVGVLRGSLHDGLV
FPGDDSTAGLVIVTEADLTGNRVAAVGDGKRLPAKRRNQVDPLALTAGDMVVHDQHGIGR
FVEMVERTIGGARREYLVIEYAASKRGHPGDRLFVPMESLDQLSRYVGGELPALSKLGGS
DWANTKRKARKAVREIAGELVQLYAARQAAPGHAFGPDTPWQKEMEDAFAFTETHDQLTV
ISEVKADMEKAVPMDRVVIGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLAQQHLQT
FTERMAAFPVTVRGLSRFTDAGDSKETIAGMADGEIDVVVGTHRLLQTGIRWKDLGLVIV
DEEQRFGVEHKEHIKALRTHVDVLTMSATPIPRTLEMSMAGIREMSTILTPPEERHPILT
YVGAYADKQVAAAIRRELLRDGQVFYVHNRVSSIDKSAQRIRELVPEARVVVAHGQMNED
TLERTVQGFWERDYDVLVCTTIIETGLDISNANTLIVERADSLGLSQLHQLRGRVGRSRE
RGYAYFLYPPEKPLTETAYDRLATISQNSDLGAGMAVAMKDLEIRGAGNVLGAEQSGHVA
GVGFDLYVRLVGEAVEAFRAAADGRPITTEDAPKEVRIDLPVDAHIPPDYVTSDRLRLEG
YRKLAAATELDGITAVVDELADRYGPLPEEVRRLVSVAKLRLLAREYGLEEIAVVGTQLK
IAPMALPDSKQLRLKRIYPSAQYRATTGMVQLPLPRAGSGGIGAERVRDVELLQYIADFV
VALDGKAAGSVVMEA
NT seq
3648 nt
NT seq
+upstream
nt +downstream
nt
ttgtcttccccgctcatcgctgccgagccctcgtccgacaccccgctcgccggtctggcg
aagatcgcgctgggcgacgcagtcatcgcgcaggtgaccgaggctctcggacgccatcac
ctcgacatcgtcgcgcccggacccgcccggccgttcgtggccgcggccctcgccgagcgc
acccatctgctgctggtcaccgcgaccggccgcgaggccgacgacctcaccgccgaactg
cgggagatgatcggcgacgccgtcgcgcagttcccgtcgtgggagacgctgccgcacgaa
cggctgtcgccgagcgccgacacggtcggtcgccgggtggaggtgctccgcagactcgcg
cggccggacgaccgctcgtacggggcgccgctccaggtcatcgtcaccaccgtccggtcg
ctggtgcagcccatggcgccgggactcggtgagatcgaacccgtcacgctgcgcgtgggc
gtcgagcacgacttcgacgggctgatccagcggctcgtcgaaatggcgtacacgcgcgtc
gacatggtgggcaagcgcggcgagttcgccgtccgcggcggcatcctggacctgttctcg
cccaccgcggatcatcccgtgcgcgtcgagttctggggcgacgaggtcaccgaactgcgc
gcgttctccgtcgcggaccagaggtcgctgcccgaactcgacatcgacgcggtgatcgcc
ccgccgtgccgcgaactgctcctcaccgaggacgtccgcgaccgggccgcgcagctcgcg
gtcgacaaccaggccgacgccgcgctcgtcgagatgctcgacaagatgtcggccggcatc
ccggtggaaggcatggaggcactgctgcccgtgctgcggccggggcaactgcagttgctc
accgacgtgctgcccgagagcgcacacgtgctgctgtgcgatccggagaagatccggacg
cgcgccaccgacctggtgcgcaccggtcaggagttcctcgaggcgtcgtggacggcggcc
tcgatcggcggcgccgccccgctcgacacctcggtgctgaggggtgacggaatcgatctc
ggcgcctccgcctaccgctcgctcagccaggtccgtgaatccgcggaggccaggggcctg
ccgtggtggacgctgagcccgctcgcgtcgggcaacggcgaggaactggagctggcggtc
acgccggcaccgcaggtccgtgggtccgacgacctgctgtcggaactgttcgtgagtctg
cgcgcccacgtcaccaccggcgggcgcgccgtcatcgtggtcgcgggcgccggcaccgcg
catcgcgtgctcgagcgtctgcgcgaggccgaggtgcccgcggctgaactcgcgcccggc
accgagcccccgcggggccaggtcggggtgctgcgcggttcgctccacgacggcctggtc
ttccccggcgacgactccactgccggactcgtcatcgtcacggaggccgatctcaccggc
aaccgggtggccgcggtcggcgacggcaagaggctgccggcgaagcgccgcaaccaggtg
gacccgctggccctgaccgccggggacatggtggtgcacgaccagcacggcatcggacga
ttcgtcgagatggtcgaacgcaccatcggcggcgcccgccgcgagtacctggtgatcgag
tacgccgccagcaagcgcggacacccgggcgaccgtctgttcgttccgatggagtcgctc
gaccagttgtcgcggtacgtcggcggcgagttgcccgcgctcagcaagctcggcggttcc
gactgggccaacaccaaacgcaaggcgcgcaaggcggttcgtgagatcgccggtgagctc
gtccagctgtacgcggcgcggcaggccgcacccggacatgcgttcggcccggacaccccg
tggcagaaggagatggaggacgcgttcgcgttcaccgagacccacgaccagctgacggtc
atcagcgaggtcaaggccgacatggagaaggcggtcccgatggaccgcgtcgtcatcggg
gacgtcggctacggcaagaccgagatcgcggtgcgggcggcgttcaaggcggtgcaggac
ggcaagcaggtggccgtcctggtgccgacgacgctgctcgctcagcagcacctgcagacg
ttcaccgagcgcatggccgcgttcccggtgacggtgcgcgggctctcccgcttcacggat
gcgggagactccaaggagaccatcgccggcatggccgacggcgagatcgacgtcgtggtc
ggcacgcaccggctgctgcagaccgggatccggtggaaggacctgggcctcgtcatcgtc
gacgaggaacagcgcttcggtgtggaacacaaggagcacatcaaggccctgcgcacccac
gtggacgttctcacgatgtcggccacgccgatcccgcgaacgctggagatgagcatggcg
ggcatccgcgagatgtccacgatcctcacgccgccggaggaacggcaccccatcctcacc
tacgtcggcgcgtacgccgacaagcaggtggcggcggccatccgacgggaactgctccgc
gacgggcaggtgttctacgtccacaaccgggtcagctcgatcgacaagtcggcccagcgg
atccgcgaactcgtccccgaggcgcgggtcgtggtggcacacgggcagatgaacgaggac
accctggaacggaccgtgcagggcttctgggaacgcgactacgacgtgctggtgtgtacc
accatcatcgagacgggtctcgacatctccaacgccaacacgctcatcgtcgaacgcgcc
gattccctcggcctgtcgcagctgcaccagttgcgcgggcgcgtcgggcggagccgggaa
cgcggctacgcgtacttcctgtacccgccggagaagccgctcaccgagactgcctacgac
cgcctcgcgaccatctcacagaactccgacctcggtgccggcatggcggtcgcgatgaag
gacctcgagatccgcggcgccggaaacgtgctgggcgccgagcagtccggtcacgtcgcg
ggtgtcgggttcgacctgtacgtgcggctggtaggggaggcggtcgaggcgttccgggcg
gcggccgacggcaggccgatcacgacggaggacgccccgaaggaggtccgtatcgacctg
cccgtcgacgcgcacatccctcccgactacgtcaccagcgaccgcctccggctcgagggc
taccgcaagctcgcggcggccaccgaactcgacggcatcacggccgtggtcgacgaactc
gccgaccggtacggaccgctgcccgaagaggtccgccgactggtctcggtggccaagctg
cgcctgctggcccgcgagtacggactcgaggagatcgccgtggtcgggacgcagctgaag
atcgcaccgatggccctgcccgactcgaagcagttgcgcctcaagcggatctacccgagc
gcccagtaccgtgccaccaccggaatggtgcagctgccgctgccccgggcggggtcgggc
ggaatcggcgcggagcgggtgcgtgacgtggagttgttgcagtacatcgccgacttcgtg
gtcgcgctggacggcaaggccgccgggtccgtggtgatggaggcctga
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