Ruania halotolerans: LQF10_04675
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Entry
LQF10_04675 CDS
T08257
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
rhal
Ruania halotolerans
Pathway
rhal03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rhal00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LQF10_04675 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rhal03400
]
LQF10_04675 (mfd)
Enzymes [BR:
rhal01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LQF10_04675 (mfd)
DNA repair and recombination proteins [BR:
rhal03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
LQF10_04675 (mfd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
UFU07409
LinkDB
All DBs
Position
1076369..1080037
Genome browser
AA seq
1222 aa
AA seq
DB search
MTLTGVLSAFRTDPAVGSLVEAVPARGPLSITASAGARAPLVAELAMHADRPLAVVVATG
READELAAALGAYLDPAGIAVFPAWETLPHERLSPRSDTVARRIAVLRRLAHPDAGDIAA
AGSGTPIRVLVLPVRAMLQPVVAGLGDLQPVALRAGDTAPMEDVIDRLVAAAYTRVDMVE
RRGEFAVRGGLLDVFAPTEAHPQRIEFWGDDVEEIRWFSAADQRSLEVSEDGMWAPPTRE
ILLTDEVRQRAADLIPTLPGAAEMLEKLSQGIAVDGMESLAPVLAGEMVPFLDLVPADTL
LMLLDPERIRRRSHDLVATTEEFLAAAWTSAAAGADTPIDLSRASFATIEDTRAIAQRRG
LGWWRVSGFATDAELAEFAEPDDPIEDEEHDGGRAVRVNTRDVEGYRGETARAVADLKDL
TRAGWRLILVTEGAGPARRMVEQLLEAEVPARLVAEIEPAGAEARAGEDPDLPPAGVVLV
TTASIGRGFVAEDLRLAVFTEADLTGRAGSSTRDMRTLPSKRRNVVDPLALRPGDYVVHE
QHGVGRFVELIQRTVGVGKSAVTREYMVIEYAASKRNQPGDRLFVPTDSLDQVTKYTGGE
SPSLNKMGGSDWAKTKGRARRAIKEIAGELIRLYSARMATEGHAFGPDTPWQRELEDAFA
FVETPDQLSSIDEVKADMEKAVPMDRLISGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPT
TLLVQQHLDTFTERYTGFPVTVKALSRFQTGAEAAAVREGVHSGAVDVVIGTHRILTGEV
HFKNLGLVVIDEEQRFGVEHKETLKQLRTNVDVLAMSATPIPRTLEMAVTGIREMSTLAT
PPEERHPVLTYVGAYAQKQISAAIRRELLREGQVFYVHNRVESIDRTAAKLRELVPDARI
AVAHGKMNEHELERVIVDFWERRFDVLVCTTIVETGLDISNANTLIVERADLFGLSQLHQ
LRGRVGRGRERAYAYFLYPPEKPLTETAHERLQTIAAHTDLGAGIQVAMKDLEIRGAGNL
LGGEQSGHIAGVGFDLYVRMVSEAVAAFKDEEPQELADLKVELPIDAHVPHDYIAHERLR
LEAYTKLSQAGDAVALDAVREELLDRYGPVPEPVERLFAVAGLRVKARAAGLADITTQGK
YIRFAPVELAESAQLRLKRLYPGTVLKPAVRTVLVPGPTTSRVGGTPLRDQALLTWVGEL
IDAVIAPDATVAAAATVASRST
NT seq
3669 nt
NT seq
+upstream
nt +downstream
nt
atgactctcaccggcgtgctttccgcgtttcgtaccgaccctgccgtcgggtccctggtc
gaggccgtcccggcccgcgggccactgtcgatcactgcctccgcaggggcccgcgccccg
ttggttgccgaactcgcgatgcatgcggaccggccgctcgcggtggtggtggccaccggc
cgcgaggccgacgaactcgccgccgcgctcggcgcgtatctggatccggccggcattgcc
gtattccccgcgtgggaaacgctcccgcacgagcggctctccccgcgcagcgatacggtg
gctcgccggattgccgtgctgcgccgccttgctcatccggatgccggtgatatcgccgcc
gccggatcaggaactccgatccgggttctcgtgctcccggtgcgcgccatgcttcagcca
gtggtggcgggccttggagatctccagcccgtggcactgcgcgccggcgacacggcgccc
atggaggatgtgatcgaccggctcgtcgctgcggcatacacccgggtggacatggtggaa
cggcgcggtgagttcgccgtacggggcggtctgctggacgtcttcgcccccaccgaggcg
catccgcaacggattgagttctggggcgacgatgtggaggagatccgctggttctccgcg
gctgaccagcgctctctcgaggtgagcgaggatggcatgtgggcgccgcccacccgcgag
atcctgctcaccgatgaggttcgccagcgtgctgccgatctgatccccacgctgcccggt
gcggcggagatgctggagaagctgagccagggcatcgccgtggacgggatggagtccctc
gcgcccgtgctggccggcgagatggtgccattcctggacctggtgcctgcggacacgctg
ctcatgctgctcgacccggagcggatccgtcgtcgctcgcacgatctggtggccaccacc
gaggagttcctcgccgcggcatggacctccgcggccgccggcgccgacaccccgatcgat
ctctcccgcgccagcttcgccaccatcgaggacactcgtgcgatcgcgcaacgccgcggt
ctcgggtggtggcgggtctccggctttgccaccgatgccgagttggccgagttcgccgag
ccggatgatcccatcgaagatgaggagcacgacggcggacgtgccgtccgtgtgaacaca
cgggacgtcgaggggtaccggggggagacggcgcgcgcggtcgccgacctgaaagacctc
acccgggcggggtggcgcctgatcctggtgaccgagggcgcgggaccggcccggcgcatg
gtcgaacagctcctcgaagccgaggttcccgcgcggctcgtcgccgagatcgaacctgca
ggcgcggaggctcgggccggagaggatccggaccttcccccggcgggtgtggtgctcgtg
accaccgccagtatcgggcgcgggttcgtcgccgaggacctccgcctcgcggtcttcacc
gaggccgatctcaccggccgggcaggctcttccacccgggatatgcgcacgttgccgtcg
aagcggcgcaacgtcgtcgatccgctggccctacggccgggagattacgtggtgcatgag
cagcacggtgtcggccggttcgtcgagttgatccagcgcacggtcggcgtcgggaagtcg
gcggtcacccgcgagtacatggtgatcgagtacgcggcctcgaagcggaaccaaccgggt
gaccggctcttcgtacccaccgactcgctcgaccaggtcaccaagtacaccggtggcgag
tcaccgagcctgaacaagatgggcggctcggattgggccaagaccaagggccgtgcccgg
cgtgccatcaaggagatcgccggtgagttgatccggctctactcggcacggatggccacc
gaggggcacgccttcggcccggacactccctggcaacgtgagctggaggacgccttcgcg
ttcgtggagacgcccgatcagctctccagcatcgacgaggtcaaggcagatatggagaag
gcggtcccgatggaccggctcatctccggtgatgtgggctacggcaagaccgagatcgcc
gtccgggctgccttcaaagccgtccaggacggcaagcaggtggctgtgctggtgcccacg
acgttgctcgtgcaacagcacctggataccttcaccgagcgctacaccggcttccccgtc
accgtgaaggccctctcccggttccagaccggcgcggaggccgccgccgttcgtgagggt
gtgcactccggtgcggtggatgtggtgatcggtacgcaccggatcctcaccggggaggtg
cacttcaagaacctcggactcgtggtgatcgacgaggaacagcgtttcggtgtggagcac
aaggagacgctcaaacagttgcgcaccaatgtggacgtgctggccatgtcagcaaccccg
atcccacgcactctcgagatggccgtgacaggcatccgggagatgtccaccctcgccacc
ccgccggaggagcggcacccggtcctcacctatgtgggtgcctacgcgcagaagcagatc
tccgctgcgatccgccgcgagctgcttcgtgagggccaggtcttctacgtgcacaaccgg
gtggagtccatcgaccgcaccgccgccaagctccgcgaactcgttccggatgcccgcatc
gccgtggcccacgggaagatgaacgaacacgagctcgaacgtgtgatcgtggatttctgg
gagcggcgcttcgatgtgctcgtgtgcaccacgatcgtggagaccgggttggacatctcc
aacgccaacaccctcatcgtcgagcgcgccgacctgttcggtctctctcaactgcaccag
ctgcggggccgggtgggccgtgggcgtgaacgggcctacgcctacttcctgtatccgccg
gagaagccgctgaccgagactgcccacgaacgcctgcagacgatcgccgcacacaccgac
cttggggcgggcatccaggtggcgatgaaggacctggagattcgtggggccggcaacctg
ctcgggggtgaacagtccgggcacatcgccggagtgggtttcgacctctacgtgcggatg
gtctccgaggctgtcgccgcattcaaggatgaggaaccgcaggagctggccgacctcaag
gtggagctgccgatcgacgcgcacgtgccacacgactacatcgctcacgaacggttgcga
ctcgaggcgtacaccaagctctcccaggcgggggacgccgtcgctctggacgccgtgcgg
gaggaattgctggaccggtacgggccggttcccgaaccggtcgagcggctgttcgccgtc
gctggtttgcgggtgaaggcccgcgcggcgggcctggccgacatcaccacgcaaggcaag
tacatccggttcgccccggtggagctggctgaatccgctcaactccgcctcaagcggctt
taccccggcacggtgctcaagcccgcggtccgcacggtgttggtgcccgggccgacgacg
tcccgcgtgggtggcacgccgctgcgggaccaggcgctgctgacctgggtcggtgaactg
atcgatgcggtgatcgccccggatgcgaccgtggcggcagctgccacggtcgcatcccgg
tccacctga
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