Rhodanobacter denitrificans: R2APBS1_0223
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Entry
R2APBS1_0223 CDS
T02495
Name
(GenBank) putative autotransporter protein,putative Ig domain-containing protein
KO
K20276
large repetitive protein
Organism
rhd
Rhodanobacter denitrificans
Pathway
rhd02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
rhd00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
R2APBS1_0223
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
He_PIG
Autotransporter
Big_9
SprB
Cadherin_5
Motif
Other DBs
NCBI-ProteinID:
AGG87399
UniProt:
M4NAC7
LinkDB
All DBs
Position
complement(253692..260342)
Genome browser
AA seq
2216 aa
AA seq
DB search
MWHPESKHRDAMRHGLGRSVFGRWTSFLLVCGMLALPGLSRAVCTAYTPSNASSGSPMAP
GTTISMDVTACSASPGFGIGNITSLANHGTATVTSNAASQISYSNNNDGATTDTFRYDDG
SGINFVTVTVHIAPKTSPITLSPATMPSGTVAVSYATQTLSATGGTAPYTFAVTSGSSLP
PGLTLSGNTISGTPTTQGSYAFSITATDSASVTGTASYSVSIGAPSVVVTNTPTAAVINR
PYGFTLTAAGGTPPYTYTLDGGTTLPAGLTLASNGTISGTPTASGTTNFTVRVTDSSGAP
GPYFSANNLSITVQNLPPPVANPVSATVAYGSTSNPITLNFTGGAPASVAVATQAAHGTA
TASGTSITYTPAAGYAGPDSFTYTGTNASGTSSPATVTITVPPPTISYTPASPPAATVGA
AYSQSLASASGGTAPYTYAIASGSLPAGITLASNGSLSGTATAGGSFNFTVTATDSSTGT
GPFSATSGSLALTVNAPTISIAPASLTNPGVAAAYSQNVTASGGAAPYAYAVTAGALPPG
LTVSSTGAITGTPTAAGSFNFVITATDSSTGTGPYTGSRAYGITVGAPTLTLAPASGTTI
NGTAGSPASATFAAANGTAPYSYAIVAGALPPGVTLSSAGALSGTATAAGNFNFTVRATD
SSTGTGAPFTVSGNYTLAVAAPTITLSPGTLPAPAVGNAYSQAITASEASPSTFTYNVSS
GLLPTGLSLGANSGVISGTPTAGGSFNFTLTATDSGGFTGSQAYSVTVGAGTVVLAPAAL
ANATAETPYTHTFTANGGTAPYAYTLTAGALPAGLALSSGGVLSGTPTAAGSFNFTVQAT
DSSTGTGAPFTASQSYALTVAAPTIAITPTTLPAGTGGAAYSQSLSAAGGSGGYTFSLAS
GALPPGITLSSSGTVSGTLTTVGNYNFTVSATDGFGFTGSRAYTFIVAAPTITITPATLP
NGQANVAYSQALGASGGNGNGSYTYSLASGALPPGITLSSAGTVSGTPTTAGNYNFTVSA
TDGFGFTGSRAYTFTVAAPTITITPATLPNGQANVAYSQALGASGGNGSYTYSLASGALP
PGVTLSSSGTVSGTPTTAGNYNFTVSATDGFGFTGSRAYTFIVAAPTITITPATLPNGQA
NVAYSQALGASGGNGSYIYSLASGALPPGIALGSAGTVSGRPTTAGNYNFTITATDGFGF
TGSQAYTFTVAVPTITLSPGILPAPAVGVAYNQTITASEGQPATFTYNVSSGALPIGLSL
DVNSGVMSGTPTAAGTYNFTITATDGSGFTGSQAYSVTVGAGTVVLDPGALANATAETPY
THAFTASGGTAPYTYSVVAGTLPSGLALSSTGTLSGTPTAAGSFNFTLRATDSSTGTSAP
FSGSRIYTLTVAAPTIAITPATLPAGGGGVAYSQALSASGGSGSYTYSLASGALPPGIAL
SSSGTVSGTPTTVGNYSFTVTATDGLGFSGSQAYTFTVAAPTITITPATLPNGQANVAYS
QALGASGGNGSYTYSLASGALPPGIALSSAGTVSGTPTTAGNYNFTVSATDGFGFTGSQA
YSLGIDQPVPVTVNDTATTPANSPVTIAVTANDAGPITSIAVAQAPAHGTAAVSGLHVVY
TPSASFFGSDSFTYTATGPGGISSPATVSVSVTPLAVPVAAAQSVSVLAGASVTIHAATG
ASNGPFTAAAVVNTPASGTATTQGTDIVYTAAANASGTFGFDYTLSNVFGTSPPAHVTVT
VNPRPVAAALTATANAGTTVQVDLVAQAHGGPFTAANVVSISPANAGSATIVSTGGGGYA
LAFTSAASFDGVAQIAYTLSNAFATSAPGTVDVTVMLRGDPSKNAEVLGVLEAQAEAARR
MAMGQIGNFQRRLESLHDSGSRAGFSNGITMSSASSQRRSDTLAGLQQQVMGGGGDPFLA
PADAPATVPAASSSGAPDGLAFWAGGAMNFGKLKPGASYNGVDFTTSGLSLGADKQLTQS
LALGLGVGYGHDASDIGQHGSRSTVDSYNVAAYGSYRPGESAYMDALVGYQWLQFDARRF
VTDNGNTVRGSRDGKQWFASFSVGYRHQADDMLLTPYGRLDIARATLDGYTETGDAVFAL
SYRDQTVKTSTATVGLLARWTVQRDYGVWAPQLRAEFGHDLQGSSQAAMRYADLPSGPLY
QATLARQSRNHTLLGAGIALQTLKGWSLRAEYQNQLDNTSRDNQSILLSVQKTLPP
NT seq
6651 nt
NT seq
+upstream
nt +downstream
nt
atgtggcatccggagtcgaagcatcgcgacgcgatgcgccatgggctcggccgtagcgta
ttcggccggtggacaagtttcctgctggtgtgcggcatgctggcgctgccgggcctgtcg
cgtgcggtctgcacggcctatacgccgtccaatgcctcctccggatcgccgatggcgccc
ggcacgacgatcagcatggacgtcacggcgtgcagcgccagccccggtttcggcatcggc
aacatcacgtcgctggcaaaccacggcacggcgacagtcaccagcaacgcggcctcgcag
atcagctactccaacaacaacgacggcgccacgacggataccttccggtacgacgatggc
tcgggcatcaatttcgtcacggtgacggtacacatcgccccgaagacctcgcccatcacg
ctctcgccggcgacgatgccctcgggcaccgtagccgtcagctacgccacccagaccctg
agcgccaccggcggcaccgcgccgtacaccttcgccgtcaccagcggttcttccctgccg
ccgggcctgacactcagcggcaacacgatctccggcacgccgaccacgcagggcagctat
gcgttctcgatcacggccaccgacagcgccagcgtcactggtacggcgagctattcggtc
tccatcggtgcgccgagcgtcgtcgtcaccaacacgcccacggcggcggtcatcaaccga
ccctacggtttcacgctgaccgccgccggcggcacgccgccgtacacctacacgctggac
ggcggcaccacgctgccagccggcctgaccctggccagcaacggcaccatcagcggcacg
cccactgcgagcggcactaccaacttcaccgtgcgcgtcacggacagcagcggcgccccc
gggccgtacttctcggccaacaacctgtccatcaccgtgcagaacctgccgcccccggtc
gccaacccggtgagtgccacggtggcctacggcagtaccagcaacccgatcaccctcaac
ttcaccggcggtgcgccggcctcggtcgccgtcgctacacaggctgcgcacggcaccgcc
accgccagcggcacctcgatcacctacactcccgccgccggctacgccggcccggacagc
ttcacctataccggcaccaacgccagcggcacgtcatcaccggccacggtgaccatcacc
gtaccgccgccgaccatcagctacacgccggccagtccgccggcggccaccgtcggcgcg
gcctacagccagtcgctcgccagcgcgagcggcggcacggcgccgtacacctacgccatc
gcctccggcagcctgccggcgggcatcacgctggccagcaacggctcgctgtcgggtacg
gccaccgcgggtggaagcttcaatttcaccgtgaccgccaccgacagcagcaccggcacc
ggtccgttcagcgccaccagcggctcgctggcgctgacggtgaacgccccgactatttcg
attgcgcctgcctcgctgaccaaccctggcgtggccgcggcgtattcgcagaacgtgacg
gcatccggcggcgccgctccgtatgcctatgccgtcaccgccggcgcgctgccgcctggc
ctgaccgtcagcagcaccggcgcgatcaccggcacgccgacggccgccggcagcttcaat
ttcgtcattaccgcgaccgacagcagtaccggcactggcccctacacgggcagccgcgcc
tacggcatcaccgtgggcgcacccacgctgacgctggcgcccgcatccgggacgaccatc
aacggcaccgccggctcgccggcaagcgccacgttcgccgccgccaacggtaccgcgcca
tacagctatgcgatcgtcgcgggcgccctgccgccgggcgtgacgctgtcgtccgcgggc
gcgctgtccggcacggcgaccgcggcgggcaacttcaacttcaccgtgcgggccacggac
agctcgaccggcaccggcgcgcccttcaccgtgtcgggcaactacaccctcgccgtggcc
gcgccgaccatcacgctgtcgccgggcaccctaccggcaccggcggtcggtaacgcgtac
agccaggcgatcaccgcatccgaagccagcccatccaccttcacctacaacgtgagctcc
ggcctgctgccgacgggcctgtcgctgggcgccaactcgggagtgatcagcggcacgccg
accgcggggggcagtttcaacttcacgctcaccgcgactgacagcggcggcttcaccggc
agccaggcctacagcgtcacggtcggcgccggcacggtggtgctggccccggcggcgctg
gccaacgccacggcggaaacgccctacacgcacaccttcaccgccaacggcggcaccgcg
ccgtatgcctacacgctgacggcgggcgcgctgccggcgggcctggcgctatcctccggc
ggcgtgctgtccggcacgcccaccgccgccggcagcttcaacttcaccgtgcaggccacg
gacagctcgaccggcaccggcgcgccattcacggccagccagagctacgctctcaccgtg
gccgcaccgaccatcgcgatcacgccgaccacactgccggcgggcaccggtggcgctgcc
tatagccagagcttgagtgccgccggcggcagcggcggctacaccttcagcctcgcctcc
ggcgcgctgccgcccggcatcaccttgagcagctcgggcacggtgtccggcacgctgacc
acggtgggcaactacaacttcaccgtcagcgcgaccgacggcttcggcttcaccggcagc
cgggcttataccttcatcgtggccgcaccgactatcaccatcaccccggccacgttgccg
aacggccaggccaacgtcgcctacagtcaggcgctgggcgcgagcggcggcaacggcaac
ggcagctacacctacagcctcgcctccggcgcgctgccgcccggcatcaccttgagcagc
gccggcaccgtgtccggcacgccgaccacggccggcaactacaacttcaccgtcagcgcg
accgacggcttcggcttcaccggcagccgggcctacacgttcaccgtggccgcgccgacc
atcaccatcaccccagccacattgccgaacggccaggccaacgtcgcctacagtcaggcg
ctgggcgcgagcggcggcaacggcagctatacctacagcctcgcctccggcgcgctgccg
cccggcgtcaccttgagcagctcgggcacggtgtccggcacgccgaccacggccggcaac
tacaacttcaccgtcagcgcgaccgacggcttcggcttcaccggcagccgggcttatacc
ttcatcgtggccgcaccgaccatcaccatcaccccggccacgttgccgaacggccaggcc
aacgtcgcctacagtcaggcgctgggcgcgagcggcggcaacggcagctacatctacagc
ctcgcctccggcgcgctgccgcccggcatcgccttgggcagcgccggcaccgtgtccggt
aggccgaccacggccggcaactacaacttcaccatcaccgcgaccgacggcttcggcttc
accggcagccaggcctacacgttcaccgtggccgtgccgaccatcacgctgtcgccgggc
atcctgccggcaccggcggtcggcgtcgcgtacaaccagaccatcaccgcatcggaaggc
caaccagccacctttacctacaatgtgagctccggcgcactgccgataggcctgtcgctg
gacgtcaactccggcgtcatgagcggcacgcccacagctgcgggaacctataacttcacc
atcaccgcaacggacggcagtggcttcaccggcagccaggcctacagcgtcacggtcggc
gcgggcacggtggtgctcgacccaggcgcgctggccaacgccacagcggaaaccccctac
actcatgccttcaccgccagcggcggcacggcaccgtatacctattccgtcgtcgccggc
acgttgccgtcgggtctggcactgtcgtccacaggcacgttgtccggcacgccgacggca
gcgggcagcttcaacttcacgctcagggccactgacagcagcactggcaccagcgcaccg
ttctcgggcagccggatctacacgctcaccgtggccgcgccgaccatcgcgatcacgccg
gcgacgctgccggcgggcggcggcggcgtcgcctacagccaggcgttgagcgccagcggc
ggcagcggcagctacacctacagcctcgcctctggcgcactgccgcccggcatcgccttg
agcagctcgggcacggtgtccggcacgccgaccacggtgggcaactacagtttcaccgtc
accgcgaccgatggcctcggcttcagcggcagccaggcctacacgttcaccgtggccgca
ccgaccatcaccatcaccccggccacgttgccgaacggccaggccaacgtcgcctacagt
caggcgctgggcgcgagcggcggcaacggcagctatacctacagcctcgcctccggcgcg
ctgccgccgggcatcgccttgagcagcgccggcacggtgtccggcacgccgaccacggcc
ggcaactacaacttcaccgtcagcgcaaccgacggcttcggcttcaccggcagccaggcc
tactcgctgggcatcgaccagcccgtgccggtcacggtgaacgacaccgccacgacaccg
gccaactcgccggtcaccatcgcggtcacggccaatgacgccggcccgatcaccagcatc
gcggtggcgcaggcgcctgcgcacggcacggcggcggtcagcggcctgcatgtggtgtac
acgccgtcggccagcttcttcggcagcgacagcttcacctacaccgcgactggccctggc
gggatttcgtcgccggccacggtcagcgtctcggtgacgccgctggccgtgccggtcgcg
gcggcgcagagcgtctcagtactggccggcgcgtcggtcacgatccatgcggccacgggt
gcaagcaacggtccattcaccgccgctgcggtggtgaacacgccagcctcgggtacggcg
acgacacagggcaccgacatcgtctacaccgccgccgcgaacgcctcgggcacgttcggc
ttcgactacacgctgagcaacgtcttcggcacctcgccaccggcccacgtcacggtgacg
gtcaacccgcgtccggtggcagccgcgctgacggcaacggcgaacgccggcaccacggta
caggtcgaccttgtcgcgcaagcgcacggcggtccgttcacggctgcgaatgtggtgtcc
atttcgccggcgaacgccggttcggccaccatcgtatccaccggcggcggtggctacgcg
ctggcgttcacctccgccgccagcttcgatggcgtggcgcagatcgcctatacgctgagc
aacgcgttcgctacctccgcaccgggcacggtcgacgttaccgtcatgctgcgcggcgat
ccgtcgaagaacgccgaagtgctgggcgtgctggaagcccaggccgaggcggcacgccgc
atggcgatgggccagatcggcaacttccagcgccgcctggaaagcctgcacgacagcggc
agccgcgccggcttcagcaacggcatcaccatgagttccgccagcagccagcggcgcagc
gacacgctagccggcctgcagcagcaggtgatgggcggcggcggcgatcccttcctggcg
cccgcagacgccccggcaaccgttcctgcagcctccagtagcggcgcgccggacggcctt
gccttctgggccggtggcgcgatgaacttcggcaagctgaagcccggcgccagctacaac
ggcgtcgacttcaccacctcgggcctcagcctgggcgcggacaagcagctgacccagtcg
ctcgcgctgggcctgggcgtcggctacggccacgatgcttccgacatcggccagcatggc
agccgcagcaccgtggacagctacaacgtcgccgcctacggcagttaccggcccggtgaa
tcggcctacatggacgcgctggtcggctaccagtggctgcagttcgacgcgcgccgcttc
gtcaccgacaacggcaacacggtgcgcggcagccgcgacggcaagcagtggttcgcctcg
ttctcggtgggctaccggcaccaggcggacgacatgctgctcacgccctacggcaggctg
gacatcgcccgcgcgacgctcgacggctacaccgaaaccggcgacgccgtgttcgcactg
agctaccgggaccagaccgtcaagaccagcaccgccaccgtgggcctgctggcgcgatgg
acggtccagcgcgactacggcgtatgggcgccgcagctgcgcgcggagttcggccacgac
ttgcaaggctccagccaggcggcgatgcgctatgcggacctgccgtccggtccgctgtac
caggccacgctggcccgccaatcccgcaaccacaccttgctcggcgcaggcatcgcgctg
cagacgctcaagggctggtcgctgcgcgcggaataccagaaccagctggacaacacgagc
cgcgacaaccagagcatcctgctcagcgtacagaagacgctgccaccgtga
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