Rhodanobacter denitrificans: R2APBS1_0679
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Entry
R2APBS1_0679 CDS
T02495
Name
(GenBank) DNA polymerase LigD, polymerase domain protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
rhd
Rhodanobacter denitrificans
Brite
KEGG Orthology (KO) [BR:
rhd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
R2APBS1_0679
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rhd03400
]
R2APBS1_0679
Enzymes [BR:
rhd01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
R2APBS1_0679
DNA repair and recombination proteins [BR:
rhd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
R2APBS1_0679
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
SPOR
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
AGG87847
UniProt:
I4WZK7
LinkDB
All DBs
Position
751630..752679
Genome browser
AA seq
349 aa
AA seq
DB search
MTFQGRLVDVPACRRNAGLCPVGAACTRGVPSIGATRWQGGKVSDSDSNLETAARGRVGA
VTVPPAAISHAARVVYPDCGISKGEVAAYYAAVARWMLPELANRPLSLLRCPDGVGSACF
FQKHHTQALGRHVQVVALREKDGGVDDYLYVRDLAGLLELVQMNALEFHPWGAQVDRPDA
PDRLVFDLDPAAGVPWAAVVAAAREIRARLRGLGLRSFVRTSGGKGLHVVLPIRRGPDWA
AAKRFCAALARALVARRPQQYVASASKSRRQGLIFIDWLRNTRGATSVCNWSLRARAGAP
VAMPLRWEELGRVQGGTAFDLPKALKRAAALQRDPWEGIATLQQVLPEL
NT seq
1050 nt
NT seq
+upstream
nt +downstream
nt
atgacgttccagggcaggctggtcgacgtgccggcgtgtcggcggaacgccggcctgtgc
cccgttggcgccgcgtgcacacgcggcgtgcctagcattggcgccacgcggtggcagggt
ggcaaggtgagcgattccgactcgaacctggaaacggcggcgcgcgggcgcgttggtgcc
gtgaccgtgccgccggcggcgatcagccatgccgcgcgcgtggtctacccggactgcggg
atcagcaagggcgaggtggccgcgtactacgccgcggtggcgcgctggatgctgccggag
ctggcgaaccggccgctgtcgctgctgcgctgcccggacggggtgggcagcgcctgcttc
ttccagaagcaccacacgcaggcgctgggccggcacgtgcaggtggtcgcgctgcgcgag
aaggacggcggcgtcgacgactacctgtacgtgcgcgacctggccggcctgctcgaactg
gtgcagatgaacgcgctggagttccatccgtggggtgcgcaggtggaccggcccgatgcg
ccggaccggctggtgttcgacctcgatccggccgcgggcgtgccgtgggcggcggtggtg
gccgcggcgcgtgagatccgtgcgcggctgcgcgggcttggcttgcggagtttcgtgcgc
accagcggcggcaagggcctgcacgtggtgctgccgatccggcgcgggccggactgggcc
gcggcgaagcgtttctgcgcggcgttggcccgcgcactggtggcgcggcggccgcagcag
tacgtcgccagcgcgagcaagtcgcggcggcagggcctgatcttcatcgactggctgcgc
aacacacgcggcgccaccagcgtgtgcaactggtcgctgcgcgcccgcgccggcgcgccg
gtggcgatgccgctgcgctgggaggaactggggcgggtgcagggcgggacggcgttcgac
ctgcccaaggcgctgaagcgggcggcggcgttgcagcgcgacccgtgggagggcatcgcc
acgctgcagcaggtgttgccggaactctga
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